Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0913 ATGACTGTGGAGAAGAGAATGGGTGATTCCGGCGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTCGATGATAACCCCATCTGCCTAATGGTTTTGGAAAATCTCCTACGGAAATGTCAATATCATGTAACTACAACAAATCAAGCAATAACAGCGTTGACGCTTTTGAGAGAACATAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTGGTGATGAAAGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAGCATGTAATCAGAAGGAAGAAGTTTGACTCAAAGGAGAAGAACCAAACATGCAACTTAGACAAACCCACTTCTGATAGTGGCAATGGACATGGATCATCAGGAGCTGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGATGAGGAGCAGGAGAATGATCATGACAATGAGGACCCGTCATCCCAGAAGAAACCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGTTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATCCATCCTATTTGAGAATGAGTTCTGTGAGTGGGGTCGGACATTTACAAACATTGAGTGGTTCTGGACAGCTTCATAACAATGGTTTTAGATCCTTTCCAACTGGTGGCATAATTAATAGGTTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCTTCTGGAGTTCTTCAGTTGAGTCAGTCACAAAATTTAAGCAACACCAACAACGATCATCTGAAGTTCCGGTCAGCCATGGCTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCAATGCCTGTTCAAAACAATAAGAGTGTCATTTCCGTTCAAAATTTGACCGCTGTTTTTAACGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGAACCAAGGCCAAAAATAACATCTGTCCCTCGCACTTCAGACGTAGGTATTGCAAACAATGCCTTGAT 1277 0.4338 MTVEKRMGDSGEEFPVGMRVLAVDDNPICLMVLENLLRKCQYHVTTTNQAITALTLLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNQTCNLDKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDEDEDEEQENDHDNEDPSSQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVSGVGHLQTLSGSGQLHNNGFRSFPTGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLSNTNNDHLKFRSAMAPVNQNGVQGMPMPVQNNKSVISVQNLTAVFNAKTNFPISNKLPEPRPKITSVPRTSDVGIANNAL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0913 425 PIRSF RR_ARR_type-B 1 420 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pvu9g0913 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Pvu9g0913 425 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Pvu9g0913 425 SMART REC_2 18 130 IPR001789 GO:0000160
Pvu9g0913 425 CDD REC_typeB_ARR-like 20 134 - -
Pvu9g0913 425 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 404 - -
Pvu9g0913 425 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Pvu9g0913 425 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 404 IPR045279 GO:0009736
Pvu9g0913 425 MobiDBLite consensus disorder prediction 150 171 - -
Pvu9g0913 425 Coils Coil 172 192 - -
Pvu9g0913 425 SUPERFAMILY CheY-like 17 141 IPR011006 -
Pvu9g0913 425 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Pvu9g0913 425 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Pvu9g0913 425 MobiDBLite consensus disorder prediction 141 206 - -
Pvu9g0913 425 Gene3D - 17 152 - -
Pvu9g0913 425 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pvu9g0913 425 Gene3D - 200 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0913 Pvu-Chr9 13831002 13833440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0913 1 379 Response Regulator Gene Family AT2G25180 57.683 1.24e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pvu9g0913 Response_reg 4.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0913 - K14491 pvu:PHAVU_009G0889000 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0913 9 13831002 13833440 Pvu9g0913 9 13831002 13833440 ECH
Pvu1g0471 1 4959782 4964285 Pvu9g0913 9 13831002 13833440 PCT