Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0910 ATGAGTAGTTTGGTGGAGAGGCTTCGTGTTAGATCAGATCGCAGGCCAATTTATAATCTTGATGAGTCAGATGACGATGCTGATTTTTTGCCAAGAAAACCCGGGACAACAGAGGAAAAGTTAGAGAGAATAGTGAGAAGTGATGCGAAAGAGGATTTATGTCAAGCCTGTGGTGAAAATCAAAATCTTGTGAGTTGTGAAACCTGCACATATGCTTACCATCCTAGGTGTTTACTTCCACCCCTTAAAGGCCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGACAAGATATTAGACTGTGAGATGCGACCTACTACAGCTGCTGACAATGATGCCACAAAATTAGGGTCAAAACAAATTTTTGTCAAACAATACCTTGTTAAGTGGAAGGGCCTATCATATTTGCATTGCACATGGGTGCCGGAGAAAGAGTTTTTGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAGGTGAACAACTTCCATCAGAAAATGGCATCTGTCAATACTTCTGATGATGACTTTGTTGCCATTCGACCAGAATGGACTACAGTTGACCGAGTACTTTCTTGCAGGGGTGATGACGACGAGAGAGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGACGAGTGCTATTGGGAGTTTGAATCAGATATTTCTGCATTTCAGCCTGAAATAGAAAGATTCAATAGATTTCGGTCTAGGTCCAGTAAATTTTCTTCCAGTAAACATAAACAGAGTGTTAAGGATGATACTGAATTGAAGAAACAGCAGAAGGAATTTCAACATTACGAACACAGCCCTGAGTTTCTCTCAGGTGGTACATTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGGCTTGGTAAAACCATACAAAGTATTGCTTTCCTGGCATCTCTTTTTGAAGAGAGTGTCTTCCCACATCTGGTGGTTGCTCCACTTTCAACTCTGCGGAATTGGGAACGTGAATTCGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTCCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGAGAGGATTAAGTTTGATGTTCTTTTGACATCGTATGAGATGATAAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTAAAAAATAAGGATTCAAAATTATTTTCCTCACTGAAGCAATATTCTAGCAGGCATCGTGTTCTCTTGACAGGAACTCCTCTTCAGAACAACTTGGACGAGCTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAGTTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTAACCCGCAATTATCAGATATTAACTCGTCGTGGTGGGGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGAGGAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTGGAACCAGATATTGATGACGCAAAAGAAGCATATAAACAACTATTGGAATCGTCAGGGAAGCTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACACAGAGTCCTTATATATTCTCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTCGGGATAAACCTTGCAACTGCTGACACGGTTGTTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACAGACTCGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACATCTAGTTGTGGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGACATGGATCACAGGAGTTATTTGCAGATGAGAATGATGAAGCCGGAAAATCCCGCCAAATCCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGACATGAAGAGGCTACTTTGGATGATGAGGAAGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAAGCTGCAGCAGAGGAGGCTGCCCAAAAAAGAGCATTGGAGAACCTAAACAATTCAGAAAGAACACATTTCTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCATTGGGAAAAGGGAAGCGAAATCGGAAGCTGATGGTTTCCGTGGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAGCTTACCGATGGCGATTCAAATTCCACTGGAACTGGAACTACTACTGCTAGAAGGCCTTACAAGAAAAAAGCTCGTACAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGTATGAAACAGAAGACTTATGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCCCACATTGCTGAAGATATAACTGAATCATCTACATTCACAGATGGTGTACCAAAAGACGGACTACGAATCCAAGATGTACTTGTAAGGATTGCAGTTCTACTCTTGATAAGGGACAAGGTGAAGTTTGCATCACAACATCCTCAAACTTCATTGTTTTCAGATGACATCCTATCACGATATCCAGGTTTGAAGGGTGCGAAGATATGGAAGGAGGATCATGATTTGGTTTTGTTGCGTTCCGTTTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGGTCATTTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTTGGCTCTCAGGCACAAAATGGTACAAATTTGACAAATGCCGAAGTACCCAACAGTCAATCCAGGGAAAATGGTGGAAGTGATATACCAGCTGATGGTGCGCAAGGTTCTGGTGATGCCAGGAATCAAGCACAATTATATCAAGACTCCTCCATATTGTATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTTAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAATCAAATGACGAACTTAAAAGTGAATCCAAGGCTCCTAAATTAAGGGAAAATGAATCCCAAATAATTGATCAACTACCGCAAGTAGAAACAATAGCTTCAGAAGAAATTTCGGCTGTTTGTGATAGTGATCCCAATCGATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGGTAGTGGAGGAAAACCCCATGGATTTAGTTCAAACTTCTTTGGCAAGAAATCCAGCAGAGCTTCATGTAGGGAAGAATTTCCCACCACTAGAAACCATTTGCAAAGACATCAACAGAATTCTAACACCCACACAAGAACAATCTGCGGCAGATATTCCAAAGTCAAATTCAGACAACAAATCAGAGGCTATGTCGGACGGCGAGATTTTGGTCGCCAAATCACTTCCAAAACCTCAAGATGCTGGCAAACCTGAAGACTCAGCAAACAATGGGAGTAAAGACATGATAATAGAATCTGAACCTATAAAAGCAAGCTGCTCAAGCCTGGTAAAAGATAAGAATGAAATTCAGACTTTTCCGGATAAAGAGAAAAGTAATACAGAAATGGATGAAACTATGACTGATGCTCAGTAG 4263 0.4042 MSSLVERLRVRSDRRPIYNLDESDDDADFLPRKPGTTEEKLERIVRSDAKEDLCQACGENQNLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDDDFVAIRPEWTTVDRVLSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKFSSSKHKQSVKDDTELKKQQKEFQHYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEESVFPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRHGSQELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGHEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAQKRALENLNNSERTHFWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTTTARRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITESSTFTDGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQHPQTSLFSDDILSRYPGLKGAKIWKEDHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQAQNGTNLTNAEVPNSQSRENGGSDIPADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNDELKSESKAPKLRENESQIIDQLPQVETIASEEISAVCDSDPNRLELVRLYNEMCKVVEENPMDLVQTSLARNPAELHVGKNFPPLETICKDINRILTPTQEQSAADIPKSNSDNKSEAMSDGEILVAKSLPKPQDAGKPEDSANNGSKDMIIESEPIKASCSSLVKDKNEIQTFPDKEKSNTEMDETMTDAQ* 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0910 1420 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Pvu9g0910 1420 Pfam CHD subfamily II, DUF1087 844 902 IPR009463 -
Pvu9g0910 1420 Gene3D - 1038 1216 - -
Pvu9g0910 1420 Coils Coil 838 858 - -
Pvu9g0910 1420 CDD CD2_tandem 190 239 - -
Pvu9g0910 1420 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Pvu9g0910 1420 ProSiteProfiles Chromo and chromo shadow domain profile. 192 254 IPR000953 -
Pvu9g0910 1420 SMART helicmild6 638 722 IPR001650 -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 923 937 - -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 1138 1174 - -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 1221 1242 - -
Pvu9g0910 1420 CDD SF2_C_SNF 607 733 - -
Pvu9g0910 1420 Pfam PHD-finger 54 96 IPR019787 -
Pvu9g0910 1420 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Pvu9g0910 1420 SMART DUF1086_2 915 1071 IPR009462 GO:0003677|GO:0006338
Pvu9g0910 1420 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 1138 1160 - -
Pvu9g0910 1420 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Pvu9g0910 1420 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Pvu9g0910 1420 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1057 - -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 1327 1420 - -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 1327 1346 - -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 904 954 - -
Pvu9g0910 1420 Gene3D - 189 241 - -
Pvu9g0910 1420 SMART chromo_7 99 162 IPR000953 -
Pvu9g0910 1420 SMART chromo_7 190 244 IPR000953 -
Pvu9g0910 1420 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Pvu9g0910 1420 Gene3D - 98 188 - -
Pvu9g0910 1420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Pvu9g0910 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 519 IPR027417 -
Pvu9g0910 1420 SMART DUF1087_2 839 905 IPR009463 -
Pvu9g0910 1420 Pfam CHD subfamily II, SANT-like domain 935 1068 IPR009462 GO:0003677|GO:0006338
Pvu9g0910 1420 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Pvu9g0910 1420 SUPERFAMILY Chromo domain-like 185 242 IPR016197 -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 1398 1413 - -
Pvu9g0910 1420 CDD CD1_tandem 98 171 - -
Pvu9g0910 1420 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Pvu9g0910 1420 SMART ultradead3 282 495 IPR014001 -
Pvu9g0910 1420 Gene3D - 278 528 IPR038718 -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 1219 1242 - -
Pvu9g0910 1420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Pvu9g0910 1420 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1057 - -
Pvu9g0910 1420 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Pvu9g0910 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 772 IPR027417 -
Pvu9g0910 1420 Gene3D - 529 753 IPR027417 -
Pvu9g0910 1420 SMART PHD_3 53 96 IPR001965 -
Pvu9g0910 1420 MobiDBLite consensus disorder prediction 904 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0910 Pvu-Chr9 13806037 13826919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0910 308 749 RAD5 or RAD16-like Gene Family AT1G02670 23.372 1.27e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu9g0910 SNF2_N 3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0910 K11643 - gmx:100790230 2553.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0469 1 4916221 4928414 Pvu9g0910 9 13806037 13826919 PCT