Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0872 ATGGAGAATGATTGCATAGAGGAGATGGACATTGAGGCTCTTCCTTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACTATCATAGAGGAGCCAACTATAGTTGACTTCAAGCGTCTCATGGAGCTTACAAATTTTACAGAAAAGGGGTCTTCTCAGTTGGCGTACCTAATGAAACGTTGGGAGTACAAAGAGGCCAATGTTGTGCGTCTTCTCAGGGAAGAGCTCGACAACCTAAGCAAACAAAGGCAGGATGTTGAGCTCAGGAAATTGGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATATGGGGGTGATAAACGCCCAGTTTCTATTTTGGATGACGTTTATGATGGTATATGGCCTGATATACCTTGCAGGAAAAGTGATGCTGTGGTTCAAAACAAGAGGAACGAGGTTGATGCTGAGAATGACACTGTCATGTACTGGAAACAGCGAGCCTTGCAATTAGAGAAGCAGCTGGAGGCAAGTATCCAAAGGGAACAGATACTTGAAGAAAAGTTGCAAGAAAGTATAGCAAACATTGAAAGGCAGTCCTCACCGGTGGAAGAACTGTCCCAGATCCTGAAAAGGGCAGACAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCACCAGGACAAAGATTTGCGCTATTGCTTTATATACAATCATTTTCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACAGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTGTTTGGGTCAAAGACATTTTTGATATATGTAGAACCCGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTCCAGAAAGCCAAGGAAACAGAGCTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCACGAGATAAGATCTCCTTTGTCTGGGGTTGTTAGCATGGCTGAAGTTCTTTCTAACACAAAGCTTGATTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTCATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAACATGTGCTCCAGACTGCTGCAGTTTCATTGCAAAAAATACTAACCTTGGAAGGACATGTAACTGATGATGTACCTATTGAGGTCGTTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCGTCAAGTTTACCCATGAAGGCAAAATTGGAATAAACCTTTACGTCGTGCCAGAACCTACTTTTGCAAAGGCAGAATGCATCCAAAAGATGACTTCAAAGCATTCAACTATTTCAGTAAATGGTTTGAAAGAAGAGAAATATCTCTCAACGCCTCAATGTGGCAGCGATAGAAATCTTCTTGGTGGTTGTCAAAAACATGATGATTGTCCCAGCCAAAACCATGCATTCAATGATGAATGTAGATCACCGGTCAAAAGCGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTATTCAGCTGGAACAACAGTGTGGATACGTTGTGATGTATATGACACGGGCATTGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAAACCATGCTCGAAAGTACGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAGCTGGTTGAGTTGATGGGGGGTCGTCTAACCGTGTCTAGCAAAGAACACTATGGTTCTACCTTCACTTTCATACTCCCTTACAAGGTTTCAATTGCTTGTGATAATTCTGATGACCAGGATGAGCTGTCTGATGTAGAGAATAATGATGTTGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAGCCATGCACTTTGGGCTCTCTATTCCCTTCTAATGGATCTAGCAGGACACAGATGTTATTACCAAACAAAATTGGCTACACAAGCTCCCATAAACCTGGTGGCTTTTCTGAGAGTTTATATTCAATCCTCTCGAATGATATCATGTCAAAAGAGACATGCTCAGTTGATGATTCATCTTCAGTTATTGATGGTCCAGAGACGTCTGAATCGGCCAGTTCATATGGTCACAGCTCAGAAACAAAGAACAGAAGTTTATTTGGCAGAGATAAACTGCAGCAAGATAAGGCTCATACTTGGTCCATGAATGGTTATGCAGATTCCTCTGAAGCAACTGTGGCAAGTGGAGAAACCCAACAAACATGTCAGGGTCATGGGAAGACCAACCCAATTGTCCAATCAAGCAACAGTACACCAGGAGTAACCAAATCCTCATTAAGGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACACAGTCCATGATGAAGCAATTAGGCCTTAGCATAGATGTTGTGAATAATGGAGTGGAAGCTGTACGTGCAGTTCAGCGCAGCACTTTTGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACCAAACTGATTCGATCTTTTGAGGAAACAGGCACTTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTCTACCAGATTCAGATTATGAATGTTCTGAACCTTCTAAAAAGCGGATTCCCATTGTTGCTATGACAGCAAATGCTTTCTCAGAGAGTGCTGAAGAGTGCTATGCAAATGGATTGGACTCGTTTGTGTCAAAACCTGTAACTTTCCAAAAACTGAAAGAATGTATTGAACAGTACCTAAGGTGA 3012 0.414 MENDCIEEMDIEALPSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKRWEYKEANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILDDVYDGIWPDIPCRKSDAVVQNKRNEVDAENDTVMYWKQRALQLEKQLEASIQREQILEEKLQESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAVSLQKILTLEGHVTDDVPIEVVGDVLRMRQILTNLISNAVKFTHEGKIGINLYVVPEPTFAKAECIQKMTSKHSTISVNGLKEEKYLSTPQCGSDRNLLGGCQKHDDCPSQNHAFNDECRSPVKSECSMNGDTEEQPYSAGTTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSANHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSTFTFILPYKVSIACDNSDDQDELSDVENNDVASDDTIESFFQFQPCTLGSLFPSNGSSRTQMLLPNKIGYTSSHKPGGFSESLYSILSNDIMSKETCSVDDSSSVIDGPETSESASSYGHSSETKNRSLFGRDKLQQDKAHTWSMNGYADSSEATVASGETQQTCQGHGKTNPIVQSSNSTPGVTKSSLRPKILLVEDNKINIMVTQSMMKQLGLSIDVVNNGVEAVRAVQRSTFDLILMDVCMPVMNGLQATKLIRSFEETGTWDAARNAGIEQSLPDSDYECSEPSKKRIPIVAMTANAFSESAEECYANGLDSFVSKPVTFQKLKECIEQYLR* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0872 1003 Pfam His Kinase A (phospho-acceptor) domain 370 433 IPR003661 GO:0000155|GO:0007165
Pvu9g0872 1003 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 1002 - -
Pvu9g0872 1003 SMART HKATPase_4 479 677 IPR003594 -
Pvu9g0872 1003 CDD REC_hyHK_CKI1_RcsC-like 860 998 - -
Pvu9g0872 1003 Pfam Response regulator receiver domain 860 927 IPR001789 GO:0000160
Pvu9g0872 1003 CDD HATPase_EvgS-ArcB-TorS-like 484 674 - -
Pvu9g0872 1003 ProSiteProfiles Histidine kinase domain profile. 375 677 IPR005467 -
Pvu9g0872 1003 Coils Coil 174 205 - -
Pvu9g0872 1003 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 1 1002 - -
Pvu9g0872 1003 MobiDBLite consensus disorder prediction 766 799 - -
Pvu9g0872 1003 Gene3D - 356 433 - -
Pvu9g0872 1003 SUPERFAMILY PYP-like sensor domain (PAS domain) 213 330 IPR035965 -
Pvu9g0872 1003 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Pvu9g0872 1003 SUPERFAMILY CheY-like 858 1003 IPR011006 -
Pvu9g0872 1003 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 675 IPR003594 -
Pvu9g0872 1003 Gene3D PAS domain 207 345 - -
Pvu9g0872 1003 Coils Coil 88 115 - -
Pvu9g0872 1003 ProSiteProfiles Response regulatory domain profile. 859 1002 IPR001789 GO:0000160
Pvu9g0872 1003 SMART REC_2 858 998 IPR001789 GO:0000160
Pvu9g0872 1003 Gene3D - 852 1003 - -
Pvu9g0872 1003 Gene3D - 434 680 IPR036890 -
Pvu9g0872 1003 MobiDBLite consensus disorder prediction 766 792 - -
Pvu9g0872 1003 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Pvu9g0872 1003 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 422 675 IPR036890 -
Pvu9g0872 1003 MobiDBLite consensus disorder prediction 822 853 - -
Pvu9g0872 1003 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Pvu9g0872 1003 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Pvu9g0872 1003 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Pvu9g0872 1003 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 433 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0872 Pvu-Chr9 13441884 13447418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0872 1 539 Histidine Kinase Gene Family AT5G10720 67.904 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu9g0872 HATPase_c 2.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0872 - - gmx:100819520 1718.75