Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0864 ATGGCGGATGTCATGGTAATGAAGGAGATCGAAGACACGGCGCTGCGTCTCGGCCTTGATCTCTCCACTCTCGATCTCGACTCCGTTCGTCTTCCTCCCGGCGAAAACTGTGGAATTGTCAGCGATGACGATGAAGTTTACCAGGAGGATAATCTCGAGTTCGAGTCTGGATTTGGTAACATCATTGTCGTGGATAACCTCCCCGTCGTTCCGAAGGAGAAGTTTGAAAAGCTCGAAGGAGTTGTTCGGAAAATTTATAGTCAGATTGGTGTTATAAAAGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACTGATAAAACCCTGGGATACTGCTTCATTGAGTACAATACTCCTCAGGAAGCAGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGATCGGGCACATATATTTTGTGTGAGCATGTTTGATGACTTTGACAGGTTTATGAAGGTTCCGAATGAGTGGGCTCCTCCTGAAACAAAGCCATATGCTCCAGGGGAAAATCTTCAACACTGGCTCACTGATGCTAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTATAAGCGGGCTTTTTGGACAGAAAGTTTTGTCCAATGGTCTCCTCTGGGGACATACTTGGCCACTGTTCACAGACAGGGGGCAGCTGTCTGGGGAGGTTCTTCAAGCTTTAACAGACTCATGCGATATGCACATCCTCAGGTAAAACTTATTGATTTTTCACCCGGTGAAAAGTATCTGGTAACTTATAGTAGCAATGAACCAAGCAATCCCCGAGATGCCAATAGGGTTGTGATAAATATATTTGATGTGAGAACTGGCAAGGTGATGAGGGACTTTAAAGGTAGTGCCGATGATTTTGCAGTTGGAGGGGCTGGGGGTGTCACAGGAGTTTCATGGCCTGTTTTCAAGTGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGAAAAAATGTACTCTCTGTGTATGAGACCGAGACCTTTTCTCTCGTTGACAAGAAGTCTCTGAAGGTTGAAAATATAATGGATTTCTGCTGGTCTCCAACTGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGGGGTGGAAACCAGCCTGCGAGGGTGAGTCTGATCCAAGTCCCCAGCAAAGAAGAACTCAGGCAGAAAAACCTTTTCAGTGTCAGTGACTGCAAGATCTACTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTAGAACGCTATACAAAAACAAAAAAGAGCACATACACAGGATTTGAGCTTTTCCGAATAAAAGAACGAGACATACCTATTGAGGTATTGGAGCTTGAAAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCCATAGGTTTGTGGTTATTCATGGTGATAACCCTAAGCCTGATGTAAGCATTTATTCCATGCGCACTGGTCAGAATAGCCGAGTTTCAAAACTCACTACTCTGAAAGGCAAGCAAGCAAATGCTCTATTTTGGTCGCCTGCAGGTCGTTACATTGTACTAGCTGGGCTGAAAGGATTCAATGGGCAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAG 1703 0.4451 MADVMVMKEIEDTALRLGLDLSTLDLDSVRLPPGENCGIVSDDDEVYQEDNLEFESGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETDKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFCVSMFDDFDRFMKVPNEWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGSSSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSNEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQVPSKEELRQKNLFSVSDCKIYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDNPKPDVSIYSMRTGQNSRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTG 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0864 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Pvu9g0864 567 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 567 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pvu9g0864 567 Pfam Eukaryotic translation initiation factor eIF2A 406 567 IPR013979 -
Pvu9g0864 567 SMART rrm1_1 61 142 IPR000504 GO:0003723
Pvu9g0864 567 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 567 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pvu9g0864 567 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Pvu9g0864 567 Gene3D - 55 154 IPR012677 -
Pvu9g0864 567 CDD RRM_eIF3B 59 142 IPR034363 -
Pvu9g0864 567 Gene3D - 382 567 IPR015943 GO:0005515
Pvu9g0864 567 Gene3D - 181 381 IPR015943 GO:0005515
Pvu9g0864 567 SUPERFAMILY RNA-binding domain, RBD 50 141 IPR035979 GO:0003676
Pvu9g0864 567 SUPERFAMILY DPP6 N-terminal domain-like 218 567 - -
Pvu9g0864 567 PANTHER BNACNNG51870D PROTEIN 5 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0864 Pvu-Chr9 13290830 13296252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0864 5 567 Eukaryotic Initiation Factors Gene Family AT5G27640 75.709 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0864 K03253 - gmx:100817394 1121.3