Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0862 ATGGCGGATGTCATGGTAATGAAGGAGATCGAAGACACGGCGCTGCGTCTCGGCCTTGATCTCTCCACACTCGATCTCGACTCCATTCGTCTTCCTCCCGGCGAAAACTGTGGAATTGTCAGCGATGACGATGAAGTTTACCAGGAGGATAATCTCGAGTTCGAGTCTGGATTTGGTAACATCATTGTCGTGGATAGCCTCCCCGTCGTTCCGAAGGAGAAGTTTGAGAAGCTCGAAGGAGTGGTTAGGAAAATTTATAGTCAGATTGGTGTTATAAAAGAGGATGGTCTCTGGATGCCTGTTGATCCTGAAACTGATAAAACCCTGGGATACTGCTTCATTGAGTACAATACTCCTCAGGAAGCAGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGATCGTGCACATATATTTTGCGTGAGCATGTTTGATGACTTTGACAGGTTTATGAAGGTTCCGAATGAGTGGGCTCTTCCTGAAACAAAGCCATATGCTCCAGGGGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTATAAGCGGGCTTTTTGGACAGAAAGTTTTGTCCAATGGTCTCCTCTGGGGACATACTTGGCCACTGTTCACAGACAGGGGGCAGCTGTCTGGGGAGGTTCTTCAAGCTTTAACAGACTTATGCGATATGCACATCCTCAGGTAAAACTTATTGATTTTTCACCTGGTGAAAAGTATCTGGTAACTTATAGTAGCAATGAACCAAGCAATCCCCGAGATGCCAATAGGGTTGTGATTAATATATTTGATGTGAGAACTGGCAAGGTGATGAGGGACTTTAAAGGTAGTGCCGATGATTTTGCAGTTGGAGGGGCTGGGGGTGTCACAGGAGTTTCATGGCCTGTTTTCAAGTGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGAAAAAATGTACTCTCTGTGTATGAGACCGAGACCTTTTCTCTCGTTGACAAGAAGTCTCTGAAGGTTGAAAATATAATGGATTTCTGCTGGTCTCCAACTGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGGGGTGGAAACCAGCCTGCGAGGGTGAGTTTGATCCAAGTCCCCAGCAAAGAAGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGACTGCAAGATCTACTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTAGAACGCTATACAAAAACAAAAAAGAGCACATACACAGGATTTGAGCTTTTCCGAATAAAAGAACGAGACATACCTATTGAGGTATTGGAGCTTGAAAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCCATAGGTTTGTGGTTATTCATGGTGATAACCCTAAGCCTGATGTAAGCATTTATTCCATGCGCACTGGTCAGAATAGCCGAGTTTCAAAACTCACTACTCTGAAAGGCAAGCAAGCAAATGCTCTATTTTGGTCACCTGCAGGTCGCTACATTGTACTAGCTGGGCTGAAAGGGTTTAATGGGCAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTATGTCGCAACTGCTGTGACATCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTTAATGGCAAACATCTATATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTGTGGAGACCAAGACCACCATCTTTCTTGAGCCCCGAGAAAGAGGAAGAGATTGCCAAGAATTTGAAGAAGTACAGCAAGAAATATGAGGCAGAAGATCAAGATGTCTCGCTGCTGTTGAGTGAGCAAGAACGTGATAAGCGGAGGATGTTGAAAGAAGATTGGGACAAGTGGATCCATGAATGGAAGAGGATCCACGAAGAAGAGAGCTTACATAGACAAAAGCTCAGGGATGGGGAAGCTAGTGATGAAGAGGAAGAGTACGAGGCGAAGGACATTGAAGTGGAGGAAGTCATTGATGTATCAGAAGAGGTCCTTCACCTTGAGTACGGTCAAGAGTGA 2157 0.4409 MADVMVMKEIEDTALRLGLDLSTLDLDSIRLPPGENCGIVSDDDEVYQEDNLEFESGFGNIIVVDSLPVVPKEKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETDKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFCVSMFDDFDRFMKVPNEWALPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGSSSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSNEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQVPSKEELRQKNLFSVSDCKIYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDNPKPDVSIYSMRTGQNSRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQERDKRRMLKEDWDKWIHEWKRIHEEESLHRQKLRDGEASDEEEEYEAKDIEVEEVIDVSEEVLHLEYGQE* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0862 718 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pvu9g0862 718 PANTHER BNACNNG51870D PROTEIN 5 711 - -
Pvu9g0862 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Pvu9g0862 718 Gene3D - 182 385 IPR015943 GO:0005515
Pvu9g0862 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Pvu9g0862 718 MobiDBLite consensus disorder prediction 675 695 - -
Pvu9g0862 718 Gene3D - 411 621 IPR015943 GO:0005515
Pvu9g0862 718 Gene3D - 55 154 IPR012677 -
Pvu9g0862 718 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Pvu9g0862 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pvu9g0862 718 SUPERFAMILY DPP6 N-terminal domain-like 218 598 - -
Pvu9g0862 718 CDD RRM_eIF3B 59 142 IPR034363 -
Pvu9g0862 718 SMART rrm1_1 61 142 IPR000504 GO:0003723
Pvu9g0862 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pvu9g0862 718 SUPERFAMILY RNA-binding domain, RBD 79 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0862 Pvu-Chr9 13282686 13287124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0862 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 75.915 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0862 K03253 - gmx:100817394 1389.4