Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0860 ATGAATTTGAACAATGATTCACCAGGCCATAACCAGACTCAAAGTAAAAAACGAAAGCAACTCGATGCTGATAATTCTCCATACCTAGAATTGTCTAATTCCAACATGAACCCCAGAAGGTATCAGGTAGAGGTGTTTCAAGTTGCATGGAGAAGGAACACAATAGCTGTGTTGGATACAGGCTCTGGTAAGACCTTGATTGCTGTGATGCTTATGAAAGAGGTTGGTCAAACCATCAAGACTTTGGCAGTGAAGAAGCTGATTGTTTTTTTGGCTCCCACAGTTCATCTTGTCAATCAGCAATTCAATAATATAAAATATCTGACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGAAGGAGATTAGTTCCAATGATGTATTGGTTATGACACCCCAGATTCTTTTAGATGCCTTAAGAAAAGCATTCCTGCGTATGGAAATGATATGCTTGATTGTTATCGATGAATGTCATAGAGCAACCGGCAACCATCCATATACAAAAATAATGAAGGAATTTTATCACCAAGCAAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAAAGGTGTTTCCTCTTCTACGGATTGTGAGGATCAAATATCAGAACTTGAAAGCATCTTGGATGCTAAGAGATATACTATTGAAGATCGGACAGAGATGGATGGATATATATTGTCTGCTCAAGAGAGTTGTAGATATTATGACCAAGCACGATTTTCTGCGTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTTCAAGTTTGATGCATTGTTATCAGAAAATAAAAGTAACTATGTGGATGTGGAAAATAAATTTAAGACACTGTCTCAACGGATGTCCAATGAACTTGGAAAAATTTTACATTGCCTTGAAGATCTTGGAATCCTATGTGCTTATGAGGCAGTTAAAATCTGTCATGAGAATTTCTCCAAAACTGAAGGAATGTGTGAAATTTACAGAACATGTTATCTTCAGTGTATAACTTTTGTTGAAGAAGTAATAAAATTAATCGAAGAATCCCTCCATCTAGCTGATAAAAATATTTTGGGGGTTGATTTTGATTATTCGAAGGCAGAAGATATGGGATACATATCTCCAAAATTACTTGAACTTATTAAAATCTTCCAATCACTTGGAGAATCTAGTCAGGTGGTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAGGATTTGCAAAGAAAGTTCCCCAGATTTCTCATTTCTCTGTTTCTTATTTAACTGGAAACAATACATCGGTTGATGCTGTGGCTCCTAAAAGGCAGAAGGAGATATTGGATTCTTTTCGTTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGGTTTGACCTCCCAAAGACGGTTCGTAGTTATGTCCAATCTCGTGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACCTGAAGCAAAGAAATCAACTCTTTGACATCATTAGGAGTGAGCGCTCCATGACTGATGCATCTATGAATAAGGACCATGAATCTAGTTTAAGAGTATGTACAATGGGGAAAACAGAGGCATACTATGTGGAATCTACCGGAGCTTCTGTGACTTTAGATTCTAGTGTTAATCTTATCCACCGATACTGTGGAACACTTCCACGAGATCAGTACTCCTCTGCAAAGCCCAGTTACGTGTTTCTGCCAGTGGAAGGGGGTTACCAATGTAAATTAACATTGCCATCTAATTCAGCCCTCCAGACAATAATTGGTCCTTCAGGAAAAGATATTCGTTTGGCAAGACATCTTGCTTGTTTTGAAGCTTGTAAGAAGTTGCATCAAATGGGTGCTTTAAATGAACATTTGGTTCCATTAATTGAAAATCATTCAGAAGATGACCATATTGTGAAAAATAAAGAATCTAGTTCGGGGGCAGGAACCACAAAAAGAAAGGAGTTACATGGAACAGCCAACATTCGTGCACTAAATGGTGCATGGGGAGACAAACTTGATGATGCAGCCAGATTTTTTGCCTATAAACTAGAGTTTGCATGTAGTATTGTTAGTGAAATATACTCTGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATATAGATTCAGATCTTTATTTAGTCTCAAAGACCGTGAAAGCTTCTGTCTCTCCGTGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGTAGATTGGTGTTTAGGTCAAAATCAGCAGGAGGAGGAACAGAATTTTTACTTCAAAAAGACACAAAATCATTGTGGAGAGAAAAACACTTATATTTGCTTCTACCACTTGAGAAATTGAATGGTATTTGTGGGGGAGCCTTCCAAATTAATTGGCATGGAATCAGTTCTTGTGCATCTGCTATTGAATTCTTAAGGAGGAAATTTTCTCTGGGCACTGGAGATTGTGATGATAACGGAATAATCACATCACCTCAGGATACCAGTTCAATGGAGATTGAATATGTTGGAACAAACAAGATTCACTTTGCTAATTGTGTGGTTGATGCTGACAATATAAAAGACACGTTAGTTTTGGCCATTCACACTGGAAAAATATATTGTATTATTGACATCGACAGTAACTTATCTGCTGAAAGTCCTTTCTGTGAAAAGTCCAAGGACCACGTTACCTTCTCAGATTATTTCAGCAAAAGGTATGGGATTACACTGAGACATCCAAGACAGTCTCTTTTACTATTAAAGCAAAGTCATAATCCACACAATCTTCTTTTTAACTTCCACGAGGAAGATGGACGAGACAAGTCATCACAAATTGGCTCTACAACCTCCAAAGTGCCTGCACATGTCCACGTCCCACCTGAGCTTCTATTTGTTCTTGATTTTCAAAGAAACGTGTTGAGGTCATTGTACTTGTTACCATCTCTAATGTACCGCATTGAATCGTTAATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTCCAACATAAATAGCTCACTGATTCTAGAAGCACTTACAACTTTGAGATGCAGTGAAAGCTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAAACACGAAGGACAATTATCTACCAGACGATCACTAGCAGTTTGTAATTCAACACTTCATAAACTGGCAATAGATCGCAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACGTCGTTGGGTTGCTCCAGGACAGCGTTCTTTACACCCTGTTTGTTGTGATTGTGGATTGGATACCCTTGAAGTGCCTTTAGATGTTAAATTCCACACCGAGGATCCAAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGACTCTTTGCATCACTCAATGTTATGAAATGGCTTGGAATTGGCACTGAACTTGAACTATCCTTGGTTGACGAAGCAATCACTGCTGCCTCTCTGCATAGTTGCGTGCTAAAAGAAAGTGAGATTGAATGCCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCTATCACACATTTGTCGGAGAAAGAACTTGGTATTGGCTGCTGTTATGAGAGACTCGAATTTCTTGGTGATTCGGTGTTGGACCTGCTTATCACATGGCATCTATATCAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTACGATCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCATCTCCTACATGGCTCGGGATTATTACTGAGCCAAATATCAGAATATGCGAAGGCCATTTCTGAATCAGATCCTAGATCACATCCAAGCATTAGAGCTCCGAAGGCACTTGGAGATCTAGTGGAAAGTATTGTTGGGGCTTTGCTAATTGATACCAAGCTCAGTCTTGACCAAGTGTGGGAGGTTTTCTGTCCCCTATTATCCCCCATAGTTACACCTGAAAAACTTGAATTGCCTCCATATCGTGAATTAAATGAATTGTGTGATTCTCTTGGGTATTTTGTAAAAGTAAATGAAAATTGTGAAAAAAAGGGATCCATGGTGCATGTTGAGGTTAGTGTACAGTTGCTAAATGATCTGTTGGTTCGTGAAGGAAAGGGGGTAAATAAAAAAACTGCAAAAGGAGAAGCTTCATTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTCATATTGTAATTTCATGTCCAAGGGAAAAAGAGATAATTCTGTCCATATGACTGATTCACCTCATCTGAAAAGGGATTCTAGTACTTGTTTTACTCTAATTGAAGAACATTCCTCAGAGCCGGTAATTAAAAGGAACAGATTGGATGGAACTAACCCAACTGAAAGTATTTTGCCTCTCAAAGACTCTTCCAATGACGACTCTGGTTTTAGTGCTTCCATTCCAGTTAATTTATCAATTAATATGAAAAAGGGAGGACCACGGACCACACTATTTGAGGTGTGTAAGAAACTACAGTGGCCAGTGCCTACATTTGATTCAACTGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGGCCTGCAAGGAACCAAGGGACTTAACTGTTTTGTTTCAAAAATTACCTTGTGCATACCCAAGTATGGAAATATAGAGTGCCAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCCTTTGACTCTGCTGCAGTTGAAATGCTTCTTGAGCTGCAAAAACTGGGAAAAGTTGAAATTGATCCTCCCCTTTCTAGTTAG 5004 0.3885 MNLNNDSPGHNQTQSKKRKQLDADNSPYLELSNSNMNPRRYQVEVFQVAWRRNTIAVLDTGSGKTLIAVMLMKEVGQTIKTLAVKKLIVFLAPTVHLVNQQFNNIKYLTDFQVEEYYGAKGVDTWTLKTWEKEISSNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRATGNHPYTKIMKEFYHQANEKPKIFGMTASPVGKKGVSSSTDCEDQISELESILDAKRYTIEDRTEMDGYILSAQESCRYYDQARFSALSLKPKIEALWFKFDALLSENKSNYVDVENKFKTLSQRMSNELGKILHCLEDLGILCAYEAVKICHENFSKTEGMCEIYRTCYLQCITFVEEVIKLIEESLHLADKNILGVDFDYSKAEDMGYISPKLLELIKIFQSLGESSQVVCLIFVDRIITAKVIEGFAKKVPQISHFSVSYLTGNNTSVDAVAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRNQLFDIIRSERSMTDASMNKDHESSLRVCTMGKTEAYYVESTGASVTLDSSVNLIHRYCGTLPRDQYSSAKPSYVFLPVEGGYQCKLTLPSNSALQTIIGPSGKDIRLARHLACFEACKKLHQMGALNEHLVPLIENHSEDDHIVKNKESSSGAGTTKRKELHGTANIRALNGAWGDKLDDAARFFAYKLEFACSIVSEIYSGFVLLIESKLDDDVGNIDSDLYLVSKTVKASVSPCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGGGTEFLLQKDTKSLWREKHLYLLLPLEKLNGICGGAFQINWHGISSCASAIEFLRRKFSLGTGDCDDNGIITSPQDTSSMEIEYVGTNKIHFANCVVDADNIKDTLVLAIHTGKIYCIIDIDSNLSAESPFCEKSKDHVTFSDYFSKRYGITLRHPRQSLLLLKQSHNPHNLLFNFHEEDGRDKSSQIGSTTSKVPAHVHVPPELLFVLDFQRNVLRSLYLLPSLMYRIESLMLSSQLREEIDGQTSKSNINSSLILEALTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSTRRSLAVCNSTLHKLAIDRKLQGYIRDSAFEPRRWVAPGQRSLHPVCCDCGLDTLEVPLDVKFHTEDPKVVVGKFCDRGHRWMCSKTIADCVEALIGAYYVGGGLFASLNVMKWLGIGTELELSLVDEAITAASLHSCVLKESEIECLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHGSGLLLSQISEYAKAISESDPRSHPSIRAPKALGDLVESIVGALLIDTKLSLDQVWEVFCPLLSPIVTPEKLELPPYRELNELCDSLGYFVKVNENCEKKGSMVHVEVSVQLLNDLLVREGKGVNKKTAKGEASFHLLKDLEKRGISYCNFMSKGKRDNSVHMTDSPHLKRDSSTCFTLIEEHSSEPVIKRNRLDGTNPTESILPLKDSSNDDSGFSASIPVNLSINMKKGGPRTTLFEVCKKLQWPVPTFDSTEYKDRSLFESCEGLQGTKGLNCFVSKITLCIPKYGNIECQGEARSDKKSSFDSAAVEMLLELQKLGKVEIDPPLSS* 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0860 1667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 220 IPR014001 -
Pvu9g0860 1667 SUPERFAMILY PAZ domain 894 1008 IPR036085 GO:0005515
Pvu9g0860 1667 Gene3D - 376 541 IPR027417 -
Pvu9g0860 1667 PANTHER DICER-RELATED 30 1658 - -
Pvu9g0860 1667 ProSiteProfiles Ribonuclease III family domain profile. 1243 1386 IPR000999 GO:0004525|GO:0006396
Pvu9g0860 1667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 544 IPR001650 -
Pvu9g0860 1667 SUPERFAMILY RNase III domain-like 1242 1406 IPR036389 GO:0004525|GO:0006396
Pvu9g0860 1667 ProSiteProfiles Ribonuclease III family domain profile. 1030 1202 IPR000999 GO:0004525|GO:0006396
Pvu9g0860 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 514 IPR027417 -
Pvu9g0860 1667 Pfam DEAD/DEAH box helicase 40 201 IPR011545 GO:0003676|GO:0005524
Pvu9g0860 1667 Gene3D - 1576 1656 - -
Pvu9g0860 1667 CDD RIBOc 1049 1213 IPR000999 GO:0004525|GO:0006396
Pvu9g0860 1667 SMART riboneu5 1258 1409 IPR000999 GO:0004525|GO:0006396
Pvu9g0860 1667 SMART riboneu5 1049 1222 IPR000999 GO:0004525|GO:0006396
Pvu9g0860 1667 Gene3D Ribonuclease III domain 1239 1410 IPR036389 GO:0004525|GO:0006396
Pvu9g0860 1667 Gene3D Dicer dimerisation domain 568 666 IPR038248 -
Pvu9g0860 1667 ProSiteProfiles PAZ domain profile. 894 1005 IPR003100 GO:0005515
Pvu9g0860 1667 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 30 1658 - -
Pvu9g0860 1667 SMART PAZ_2_a_3 869 1029 IPR003100 GO:0005515
Pvu9g0860 1667 Gene3D paz domain 881 1003 - -
Pvu9g0860 1667 SMART helicmild6 419 506 IPR001650 -
Pvu9g0860 1667 CDD DEXHc_dicer 36 234 - -
Pvu9g0860 1667 Gene3D Ribonuclease III domain 1031 1213 IPR036389 GO:0004525|GO:0006396
Pvu9g0860 1667 ProSitePatterns Ribonuclease III family signature. 1279 1287 IPR000999 GO:0004525|GO:0006396
Pvu9g0860 1667 CDD SF2_C_dicer 382 514 - -
Pvu9g0860 1667 SUPERFAMILY RNase III domain-like 1041 1220 IPR036389 GO:0004525|GO:0006396
Pvu9g0860 1667 Pfam Ribonuclease III domain 1279 1385 IPR000999 GO:0004525|GO:0006396
Pvu9g0860 1667 Pfam Ribonuclease III domain 1067 1201 IPR000999 GO:0004525|GO:0006396
Pvu9g0860 1667 Pfam Helicase conserved C-terminal domain 398 503 IPR001650 -
Pvu9g0860 1667 CDD RIBOc 1259 1407 IPR000999 GO:0004525|GO:0006396
Pvu9g0860 1667 Gene3D - 32 268 IPR027417 -
Pvu9g0860 1667 SMART ultradead3 34 233 IPR014001 -
Pvu9g0860 1667 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 573 663 IPR005034 GO:0016891
Pvu9g0860 1667 Pfam Dicer dimerisation domain 573 658 - -
Pvu9g0860 1667 MobiDBLite consensus disorder prediction 1 34 - -
Pvu9g0860 1667 Pfam PAZ domain 895 1026 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0860 Pvu-Chr9 13249918 13268354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0860 430 503 Eukaryotic Initiation Factors Gene Family AT3G19760 37.333 1.25e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0860 K11592 - gmx:100806831 2757.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0860 9 13249918 13268354 Pvu9g0860 9 13249918 13268354 ECH
Pvu3g1319 3 30948239 30959535 Pvu9g0860 9 13249918 13268354 ECH
Pvu9g2310 9 33091759 33110245 Pvu9g0860 9 13249918 13268354 ECH