Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0827 ATGGAGGCAGCCGGAGGAGCTCCCTTGAACCCTTCCGTCCAAGAAGTCTTCCTGGATTTCAAGGGCCGCAGAACAGCCATTGTTAAGGCCCTCACCACCGATTTTAAAGACTTCTTTCAGCAATGTGATCCAGAGAAGGAAGATCTTTGTCTTTATGGATTTCCTGATGAAGTCTGGCAAGTCGATCTGCCAGCTGAGGAGGTGCCTGCAGAAATTCCAGAGCCAGTATTAGGTATTAACTTTGCCAGAGACGGGATGGAAAAAAAGGACTGGCTATCCTTTGTTGCTGCCCACAGTGATTCATGGTTAATATCTGTGGCCATGTTTTTTGGTGCAAGATTTGGGTTTAATAAGGCTGATAGGAGTCATCTTTTTAATATGATAAATGATCTTCCAACAGTATTTGACGTTGTTGTTGGGAAGGTCAAGAAACAAGGAAAGAAAAAGTCATCAGCTTCTAATCATGACAACAACAAATCTAAATCAAACACCAAGAGAGGTTTTGAATCTCAAGGAAATTATTCAAAAGCAATGGAAGTAAAGGACGAGGATGATTTGGAAGAGGAGGACGAAGAACATGGAGAGACACTTTGTGGAGCATGTGGAGAGAGCGATGCGGCTGATGCTGGTGGATTCTGGATTTGCTGTGACGTTTGCGAAAGGTGGTTTCATGGGAAATGTGTGAAGATTACCCGTGCTAAGGCTGAGTATATCAAGCATTACAAATGTCCATCTTGCAGCAACAAGAAGCTCGTCAATTGTAGCTTCTAG 771 0.4345 MEAAGGAPLNPSVQEVFLDFKGRRTAIVKALTTDFKDFFQQCDPEKEDLCLYGFPDEVWQVDLPAEEVPAEIPEPVLGINFARDGMEKKDWLSFVAAHSDSWLISVAMFFGARFGFNKADRSHLFNMINDLPTVFDVVVGKVKKQGKKKSSASNHDNNKSKSNTKRGFESQGNYSKAMEVKDEDDLEEEDEEHGETLCGACGESDAADAGGFWICCDVCERWFHGKCVKITRAKAEYIKHYKCPSCSNKKLVNCSF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0827 256 Pfam PHD-finger 198 249 IPR019787 -
Pvu9g0827 256 ProSitePatterns Zinc finger PHD-type signature. 198 246 IPR019786 -
Pvu9g0827 256 MobiDBLite consensus disorder prediction 149 163 - -
Pvu9g0827 256 SUPERFAMILY FYVE/PHD zinc finger 186 250 IPR011011 -
Pvu9g0827 256 CDD PHD_AL_plant 197 249 IPR044104 -
Pvu9g0827 256 PANTHER CPG BINDING PROTEIN 12 250 IPR045104 GO:0006355|GO:0042393
Pvu9g0827 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 248 IPR013083 -
Pvu9g0827 256 SMART PHD_3 197 247 IPR001965 -
Pvu9g0827 256 Pfam Alfin 13 139 IPR021998 GO:0006355|GO:0042393
Pvu9g0827 256 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 12 250 - -
Pvu9g0827 256 MobiDBLite consensus disorder prediction 146 186 - -
Pvu9g0827 256 ProSiteProfiles Zinc finger PHD-type profile. 195 249 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0827 Pvu-Chr9 12945490 12948309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0827 5 250 Alfin-like Transcription Factor Family AT3G42790 65.462 7.62e-105 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pvu9g0827 Alfin 1.9e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0827 - - vra:106761220 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0827 9 12945490 12948309 Pvu9g0827 9 12945490 12948309 ECH
Pvu9g0827 9 12945490 12948309 Pvu10g1387 10 40524082 40528108 ECH
Pvu9g0827 9 12945490 12948309 Pvu5g1609 5 38224578 38229423 ECH
Pvu9g0827 9 12945490 12948309 Pvu1g0402 1 4041582 4045807 ECH