Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0826 ATGGACGCAGCCGGAGGAGCTCCCTACAATCCCCGTTCCGTCAACGAGGTCTTCCGAGATTTCAAGGGCCGCAGAGCCGCCATTGTTAAGGCCCTCACCACCGATGTTGAATTGTTCTATCAGCAGTGTGATCCAGATAAGGAAAATCTTTGTCTTTATGGATTTCCTAACGAGCACTGGGAAGTCAATCTACCTGCTGAGGAGGTTCCTCCAGAGCTTCCAGAACCAGCATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATTCATGGTTAATTTCTGTGGCCATGTATTTTGGTGCAAGATTTGGATTTGATAGGGCTGATAGGAAGAGTCTTTTCAGTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTTCAGGGAAGTCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAGTCATGACAATAACAAATCTAAACCAAACTCCAAGAGAGGTTCTGAATCACAAGAAAAGTATTCAAAATCAATGGAATCAAAGGATGAGGGTGCTTTGGAAAAGTACGATGAAGAGCATGGAGAGACACTCTGTGGGGCATGTGGAGAGAACTATGCTATTGATGCTGATGAGTTCTGGATTTGCTGTGACATTTGTGAGAGGTGGTTTCATGGAAAATGTGTGAGGATTACCCCTGCGAAGGCTGAGGGTATCAAGCATTACAAATGTCCATCTTGCAGCAACAAGAAAGCTCGTCAATAG 765 0.4405 MDAAGGAPYNPRSVNEVFRDFKGRRAAIVKALTTDVELFYQQCDPDKENLCLYGFPNEHWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDSWLISVAMYFGARFGFDRADRKSLFSMINDLPTIFEVVSGKSKKQGKEKSSVSSHDNNKSKPNSKRGSESQEKYSKSMESKDEGALEKYDEEHGETLCGACGENYAIDADEFWICCDICERWFHGKCVRITPAKAEGIKHYKCPSCSNKKARQ* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0826 254 ProSitePatterns Zinc finger PHD-type signature. 199 247 IPR019786 -
Pvu9g0826 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 249 IPR013083 -
Pvu9g0826 254 Pfam PHD-finger 199 250 IPR019787 -
Pvu9g0826 254 ProSiteProfiles Zinc finger PHD-type profile. 196 250 IPR019787 -
Pvu9g0826 254 SUPERFAMILY FYVE/PHD zinc finger 191 251 IPR011011 -
Pvu9g0826 254 PANTHER CPG BINDING PROTEIN 7 253 IPR045104 GO:0006355|GO:0042393
Pvu9g0826 254 MobiDBLite consensus disorder prediction 146 187 - -
Pvu9g0826 254 SMART PHD_3 198 248 IPR001965 -
Pvu9g0826 254 Pfam Alfin 14 140 IPR021998 GO:0006355|GO:0042393
Pvu9g0826 254 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 7 253 - -
Pvu9g0826 254 CDD PHD_AL_plant 198 250 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0826 Pvu-Chr9 12939182 12942122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0826 4 253 Alfin-like Transcription Factor Family AT3G42790 69.323 3.79e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pvu9g0826 Alfin 2.8e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0826 - - vvi:100247536 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0826 9 12939182 12942122 Pvu9g0826 9 12939182 12942122 ECH