LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g0806	ATGGGTGCCTCAGGAAAATGGGTAAAGGCTTTAATCGGACTCAAGAAACCAGACAAAGACGAACATGTGAAAGAGGGTGGTAAGAGCAAGAAGTGGAGGCTATGGAGGAGTTCTTCTGGGGATATGGGTTCTTGGAAGGGTTTCAAAGGAAACCACCACAGAGAGGCTTCTGAAGGGTCTGATTCTCCACCTGTTTTAGCAGCAGATGCTTACACAGCTGCAGTAGCCACTGTGGTTCGAGCACCACCTAAGGATTTCAGACTCGTCAAGCAAGAATGGGCCGCTATAAGAATCCAAACTGCTTTCCGTGGCTTCTTGGCAAGAAGGGCTTTGAGGGCATTGAAGGGAGTGGTGAGGATTCAAGCTCTTGTGCGGGGTAGACAGGTGAGGAAGCAAGCTGCGGTGACACTGAGGTGTATGCAGGCCTTGGTTCGGGTTCAGGCCCGTGTAAGAGCTCGTCGTGTGAGGATGTCCATGGAGGGGCAAGCTGTGCAGAACATGCTTAATGAAAGGCGCACTAAGCTTGAACTTTTGAAGCAAGCTGAGCAATGCAGATCAGCCCAAAGTTACAATTCACGAACTACTAATGGCTCTTTTTGCTCCCTGAAGAGTCATGAGAGTAACAAAGCTAACTGGGGGTGGACTTGGTTGGAGCGTTGGATGGCAGCCAAGCCTTGGGAGAGTAGATTGATGGAACAATCTCAGGCTGAAGCCTTGTTAGATAAAACCCCACTTCCAAAGAAGTTTGAGGAACCCTTTGTGAACTCTAATTCCAAACCATGTTTGGTCAAGGTAAAGAAGAACAACATGACAACAAGGGTTTCTGCTAGGCCTCCCCTTGTTGGGCAAGCTACTCGTTCATCCTCAAGTCCAAGTTCTGAGTTTCGATATGATGAGAGCTCTGCATCATCTTCTATTTGTACATCTACAACACCGATATCTGGGAACACTTGTGACAGGACTGATGATAGTAACGGTAATGCTGTTGCTAGGCCTAATTACATGAACCTGACTCAGTCCACAAAGGCAAAGTTAAAGACAAGTAGTAATCATGTGTATAGTAGAGCTCAAAGGCAACAGTCCATGGATGAGTTTCAATTTCTCAAGAGGGCAGCGGTTTTCTCCAATGGAGATTCCAAAAGCACTGCCGGTTATGACCCTTCAATCAACCTTTCTAGGCCACTTCACTTGGACAAGGGCTCAGTGAGGCCACGGTGA	1218	0.4754	MGASGKWVKALIGLKKPDKDEHVKEGGKSKKWRLWRSSSGDMGSWKGFKGNHHREASEGSDSPPVLAADAYTAAVATVVRAPPKDFRLVKQEWAAIRIQTAFRGFLARRALRALKGVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKLELLKQAEQCRSAQSYNSRTTNGSFCSLKSHESNKANWGWTWLERWMAAKPWESRLMEQSQAEALLDKTPLPKKFEEPFVNSNSKPCLVKVKKNNMTTRVSARPPLVGQATRSSSSPSSEFRYDESSASSSICTSTTPISGNTCDRTDDSNGNAVARPNYMNLTQSTKAKLKTSSNHVYSRAQRQQSMDEFQFLKRAAVFSNGDSKSTAGYDPSINLSRPLHLDKGSVRPR*	406

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu9g0806	405	ProSiteProfiles	IQ motif profile.	115	142	IPR000048	GO:0005515
Pvu9g0806	405	Pfam	IQ calmodulin-binding motif	115	132	IPR000048	GO:0005515
Pvu9g0806	405	Pfam	IQ calmodulin-binding motif	93	112	IPR000048	GO:0005515
Pvu9g0806	405	Pfam	Protein of unknown function (DUF4005)	301	382	IPR025064	-
Pvu9g0806	405	MobiDBLite	consensus disorder prediction	273	331	-	-
Pvu9g0806	405	ProSiteProfiles	IQ motif profile.	91	119	IPR000048	GO:0005515
Pvu9g0806	405	SMART	iq_5	113	134	IPR000048	GO:0005515
Pvu9g0806	405	SMART	iq_5	90	112	IPR000048	GO:0005515
Pvu9g0806	405	MobiDBLite	consensus disorder prediction	376	405	-	-
Pvu9g0806	405	Gene3D	-	90	133	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g0806	Pvu-Chr9	12770744	12773243	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g0806	1	405	IQD Protein Family	AT2G26180	54.054	7.63e-115	340

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g0806	-		-	gmx:100799714	606.29

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g0378	1	3585319	3588513	Pvu9g0806	9	12770744	12773243	PCT

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