Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0796 GATGGGAAGTTTGTGTTTCATGGTGGATCATTGGATAATCAACAAGTGTGCATTGCCTCGTCCACCCAACCAAAGTCGGTTATGGCAGATCCAATTAGCAGAGCGTGTGGCCACCATGATTTATCCTTCAACAAAATAGAGAACCAAGAAAACAAAAGAGGTAACTACGATCAGTATGAAAAATGGTTGTCTTCAAATGTGAGGTTCACTAGAAAGATGATGAGCCCACCTAGCACTAACAGTGATCTGGCCACAAACAAATTCGATATTATTAGGGTTTGTGCAGATTGTAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGTGGCATTCGGCAGAGGAAGGCAAAAAGAGCAATGGCAGAAGCTGCGAATGGTTTTGCTCCTTCCACTTCTGTGGATGCAAAGTCCAGAGTGCGTTCTCACAAGGAAAAGAAGTGTCGTACAAACCATTCAGCGCGGTTCAAGAATAAGTGCAAGACTGCAACTAGTGGTGCTGCTAGAGGAACATTATCGGAGGAAGACTTGAAGGATTTTGCTATAGGTTTGAGGGATGATTCAGATTTGAAGCAAGTGTTTCCAATGGATGAAGTAGCTCAGGCAGCGTTGCTTCTTATGGATTTATCTAGAGCCTTTCTTTACTTATAA 678 0.4351 DGKFVFHGGSLDNQQVCIASSTQPKSVMADPISRACGHHDLSFNKIENQENKRGNYDQYEKWLSSNVRFTRKMMSPPSTNSDLATNKFDIIRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKAKRAMAEAANGFAPSTSVDAKSRVRSHKEKKCRTNHSARFKNKCKTATSGAARGTLSEEDLKDFAIGLRDDSDLKQVFPMDEVAQAALLLMDLSRAFLYL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0796 225 ProSitePatterns GATA-type zinc finger domain. 94 119 IPR000679 GO:0006355|GO:0043565
Pvu9g0796 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 87 129 - -
Pvu9g0796 225 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 19 220 - -
Pvu9g0796 225 Gene3D - 91 171 IPR013088 GO:0006355|GO:0008270
Pvu9g0796 225 ProSiteProfiles GATA-type zinc finger domain profile. 92 124 IPR000679 GO:0006355|GO:0043565
Pvu9g0796 225 SMART GATA_3 88 139 IPR000679 GO:0006355|GO:0043565
Pvu9g0796 225 CDD ZnF_GATA 93 125 IPR000679 GO:0006355|GO:0043565
Pvu9g0796 225 Pfam GATA zinc finger 94 127 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0796 Pvu-Chr9 12650657 12651460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0796 61 224 C2C2-Gata Transcription Factor Family AT4G26150 32.353 9.24e-22 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu9g0796 GATA 5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0796 - - pvu:PHAVU_009G077500g 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0796 9 12650657 12651460 Pvu9g0796 9 12650657 12651460 ECH
Pvu1g0362 1 3425720 3427942 Pvu9g0796 9 12650657 12651460 PCT