Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0792 ATGGAGAGAGATATATACATTGCTCCACTGGACATTTCTGGCCGAGGTGCTACAGTAATAGATGAAATTTCCCAACATTCCACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCTCACGTCATGAATGGAATTTCAATGCTTTCTGGAGAGCAAGTTGAACCTATTAGTAATGTCCATGCTGATGCTTGCTTCATTAATCAATCAATTATTGCTGACTCTAGTCCATTAGTTACATCACGAAGAAAGAGTATTGTGGGAGATGCCTCAAATCCCATGGAGAACACTGAGTTTCTGGAGCATTTAGTTGGAGGAGTGCCACTCACTCCTGCTTCGCTTGCTGCCATTCTTGCTGCTAGAATTGGCCTTGAAGAAGATTTGGAGAATTCAGCAGCCCTGCCTCCCTCAATCTGCTCCACGGGGGCACTAGAGGTATTCTTCAACAATTTGCAAGGTACTTCAAACCCTTTGTCTGCAACTTTTGAGGACTGTGATTACAATGAAGTTCCTAGTAAGTGGAATGCTAACAAATTTCATAAAGCTCCAGAGATTGGTGGAACTTGTGAGCCTTATTCTTCTATAGCAAATCTGGATCCAAATGAATGGACAACATCAAACGTTGCAAACATGGCCAGTTATGCTTACTGTTCCTCTAACTTTAGTAAAGAACTTTCTCTAAGTCTTGCAACATCTACAACCGCAGGACAGTACTCAGAGGTGACTTGCTCTAATATGACCCCTTGCATGAATGGAACCATTTCCTGCAGCAGTAGTAGACAGCTTTCTATGAATTTGGGTGGTAATAAATATGTACAATTTTCACCAGAAGTACTGGAATCGAGATACCTTCTTGGGATTCAAGAGATACTTGCTCAAATTGCACGATATTCATTTGAAAATCTGAAACAATTAAATTATTCAGCACCTGGTAATAGAGCAGGTGGAAACAGGTCAGCTTCAGCCTTTCCACCCATGAGAAATATCTTGACAGATCACAATGCAAATTCTATTTACGAATCTCATGCAGAGTCTCCACTGCAAAGGCGGGTTGCTGAATCGAAGAAAGCCCAGCTGCTGACACTTCTACAACTGGTGGACAATCGATACAGCCAGTGTTTGGATGAGATACATACTGTTATATCTGCATTTCATGCAGCTACCGAGCTGGACCCACAAATACATGCACATTTTGCTCTTCAAACCATCTCTGTTCTTTACAAGGACTTACGGGAGAGGATTAGCAACTACATTCTTGCCATGGGATCAAGTTTCAACAAATCGTGTGCGGAAGAGAATGAATGGTCTATTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCAGAAAGATCTGTCTCGGTTCTTCGGGCATGGATGTTTCAGAATTTCTTACACCCGTATCCCAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACAAGAAGTCAGGTATCCAACTGGTTTATAAATGCTCGTGTGCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAACAAAAGAAAGGCTTGTCGAAATGAAGAAGGAATCCAGAATAACCATGGAAACAGGATAGGCATGAGTAATCAAAGGTTTAATGTTAACTAA 1686 0.417 MERDIYIAPLDISGRGATVIDEISQHSTSNPLIQCYSLDLNNQSHVMNGISMLSGEQVEPISNVHADACFINQSIIADSSPLVTSRRKSIVGDASNPMENTEFLEHLVGGVPLTPASLAAILAARIGLEEDLENSAALPPSICSTGALEVFFNNLQGTSNPLSATFEDCDYNEVPSKWNANKFHKAPEIGGTCEPYSSIANLDPNEWTTSNVANMASYAYCSSNFSKELSLSLATSTTAGQYSEVTCSNMTPCMNGTISCSSSRQLSMNLGGNKYVQFSPEVLESRYLLGIQEILAQIARYSFENLKQLNYSAPGNRAGGNRSASAFPPMRNILTDHNANSIYESHAESPLQRRVAESKKAQLLTLLQLVDNRYSQCLDEIHTVISAFHAATELDPQIHAHFALQTISVLYKDLRERISNYILAMGSSFNKSCAEENEWSIETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGIQNNHGNRIGMSNQRFNVN* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0792 561 CDD homeodomain 462 523 IPR001356 GO:0003677
Pvu9g0792 561 PANTHER HOMEOBOX PROTEIN ATH1 11 558 - -
Pvu9g0792 561 SMART prehox3 276 420 IPR006563 -
Pvu9g0792 561 SMART HOX_1 462 526 IPR001356 GO:0003677
Pvu9g0792 561 SUPERFAMILY Homeodomain-like 464 531 IPR009057 -
Pvu9g0792 561 Pfam Associated with HOX 282 419 IPR006563 -
Pvu9g0792 561 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 558 - -
Pvu9g0792 561 Pfam Homeobox KN domain 479 518 IPR008422 GO:0003677|GO:0006355
Pvu9g0792 561 Gene3D - 465 545 - -
Pvu9g0792 561 ProSiteProfiles 'Homeobox' domain profile. 459 522 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0792 Pvu-Chr9 12618368 12621886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0792 228 546 Homeobox Transcription Factor Family AT4G32980 56.347 2.28e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu9g0792 POX 9.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0792 - - gmx:100820354 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0792 9 12618368 12621886 Pvu9g0792 9 12618368 12621886 ECH
Pvu1g0348 1 3312014 3315760 Pvu9g0792 9 12618368 12621886 PCT