Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0776 ATGATACCAAACGTTCAAATACACCTCTGGGACTCCGCCGCCGCAGACGGAGGACCACTCTCCCCGTTCTCTCCCAATGCGCCCGACACCGCCTCCTTCTCCACCGATCATTTCCTGATGTTTCAGTTCAAGGTACTCACCTGTCCACGTGCCAGGTCCCACGACTGGACCGAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACGGCCTGCCCTGATTACCGGAAGGGGAACTGCAAGAGGGGTGACACGTGTCAGTTCGCGCATGGCGTCTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCACCTCTGTAAAGACGGGACTAATTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACCAACGACCAGCTCCGCCTCGTACCCGAATCGTCCTCTCTTTCCTCTCCCACTTCCGTTATGAACTCTTCCTTCTTCGATTCTCCGCCCTCTTCTCCTTACGTACACAACATACAAGAGATAGTTAGCTCAATGCGGAGTGTTCAACTGGACGATGGGCTTTTTTCGGGTTTGACCCGGTGCGTGTTCGGGTCGCCACGTGGCGGTATTTTAAGTGGCAATGCGTGTGAGGAAGAAGAGGCTGCTATGGAGAGAGTGGAATCTGGGAGAGATATTAGGGCGAGAATCTACGCCAAGCTTAGCAGGGATAATTCCATTGGAGGTTCTGCTCCTCACATTGGATTTGGTGGCCTTTGA 756 0.5608 MIPNVQIHLWDSAAADGGPLSPFSPNAPDTASFSTDHFLMFQFKVLTCPRARSHDWTECPYAHPAEKARRRDPRKFLYSATACPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTHLCKDGTNCRRRVCFFAHTNDQLRLVPESSSLSSPTSVMNSSFFDSPPSSPYVHNIQEIVSSMRSVQLDDGLFSGLTRCVFGSPRGGILSGNACEEEEAAMERVESGRDIRARIYAKLSRDNSIGGSAPHIGFGGL* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0776 251 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
Pvu9g0776 251 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 102 IPR000571 GO:0046872
Pvu9g0776 251 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 207 245 - -
Pvu9g0776 251 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 25 206 - -
Pvu9g0776 251 Gene3D - 77 140 - -
Pvu9g0776 251 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Pvu9g0776 251 SMART c3hfinal6 112 135 IPR000571 GO:0046872
Pvu9g0776 251 PANTHER UNKEMPT FAMILY MEMBER 25 206 IPR045234 -
Pvu9g0776 251 PANTHER UNKEMPT FAMILY MEMBER 207 245 IPR045234 -
Pvu9g0776 251 SUPERFAMILY CCCH zinc finger 76 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0776 Pvu-Chr9 12478833 12479986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0776 22 166 C2H2 Transcription Factor Family AT5G12850 55.414 1.36e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu9g0776 zf-CCCH 8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0776 - K23048 gmx:100786368 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0776 9 12478833 12479986 Pvu9g0776 9 12478833 12479986 ECH