Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0773 ATGCTCTTTGATATCTCTAACCCATGCCTTCGACTTGGTCTTGGCCTCCAAGATCAGTCCCAAGAAACTTGCATGAAGAGCCATGAACAAAGGCAGAAAAAAAAGGAAGCCGATCCACGTAACAGGGCTCACCCATCACTTAGGTTAAGACCACCCCATGATGACGCAAACAATAACCACCAAGTTACAAAGACTGATTCCGATGAATATTTTAATTTTCACCCTCATGCTTCTCCTGCCAGTGCAGTGTCTTCGTTTTTTAACTCATCAAGCTTCATCAAGAGAGAGAGAGATCAGTTGGCGGGTCAAGAACTCGAGTTAGAGGTAGAGAAGTTTCCCTCGAACTTAAGGGTTGTGGATCTTGATGAATATGGTTGCTCCAAGAAGAAGCTTAGGCTCACCAAAGAACAATCTGCAGTATTGGAAGATAGCTTCAAAGAGCATTCTACTCTCACTCTGACACATAAGCAAGAATTGGCAAAGAAACTGAATCTGCGAGCAAGACAAGTGGAGGTATGGTTTCAGAACAGGAGAGCCAGGAATAAACTGAAACAAACGGAAGTGAACTGTGAGTTACTGAAAAAGTGCTGCAAAAGTCTAACAGAGGAGAACAAGATTCTGCAAAAAGAGTTGGAAGAGCTTAAATCGATGAAAACAGCATTGCAGGGACCCATTTTTATGCAGCTTCCAGTGGCAACCCTTAGAATATGCCCTTCCT 718 0.4318 MLFDISNPCLRLGLGLQDQSQETCMKSHEQRQKKKEADPRNRAHPSLRLRPPHDDANNNHQVTKTDSDEYFNFHPHASPASAVSSFFNSSSFIKRERDQLAGQELELEVEKFPSNLRVVDLDEYGCSKKKLRLTKEQSAVLEDSFKEHSTLTLTHKQELAKKLNLRARQVEVWFQNRRARNKLKQTEVNCELLKKCCKSLTEENKILQKELEELKSMKTALQGPIFMQLPVATLRICPS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0773 239 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Pvu9g0773 239 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 8 239 - -
Pvu9g0773 239 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Pvu9g0773 239 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Pvu9g0773 239 Gene3D - 123 189 - -
Pvu9g0773 239 MobiDBLite consensus disorder prediction 24 63 - -
Pvu9g0773 239 MobiDBLite consensus disorder prediction 18 63 - -
Pvu9g0773 239 SMART HOX_1 126 188 IPR001356 GO:0003677
Pvu9g0773 239 PANTHER - 8 239 - -
Pvu9g0773 239 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Pvu9g0773 239 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Pvu9g0773 239 CDD homeodomain 128 185 IPR001356 GO:0003677
Pvu9g0773 239 SUPERFAMILY Homeodomain-like 122 185 IPR009057 -
Pvu9g0773 239 Coils Coil 183 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0773 Pvu-Chr9 12458348 12461158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0773 122 239 Homeobox Transcription Factor Family AT4G37790 67.227 6.54e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu9g0773 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0773 K09338 - gmx:100790927 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0773 9 12458348 12461158 Pvu9g0773 9 12458348 12461158 ECH