Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0762 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCATTTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTCGCCAAGTACGGCGCCGTTCTGGACTCCACAATCTCCTTAGACCACAGTACCCGATGCCCTAGAGGTTTCGGTTTCGTCACCTTCTCCGACCTCTCCGCTGCTGATCAAGCCCTCCAAGACACGCATGTCATTCTCGGAAGAACGGTAGAAGTGAAGAAAGCAATTCCCAGGAGTGAACAACAGCAACACCAAAACCAGTTATACAGTAGAGGGGGAGGTAACTATAGTAATAGTTGTGACTGTGGCAGTGACACCAACGTTAGGACTAAAAAGATTTTTGTAGGGGGTTTACCTGCTGGTATTTCTGAGGAGGAGTTTAAGCAATACTTTGAGAGGTTTGGACGGATTACTGATGTTGTGGTGATGCAGGACAGTGTTACTCACCGGCCCAGGGGGTTTGGGTTCATCACGTTTGATTCCGAGGAATCGGTTCAAAGTGTTATGGTGAGGAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCTAAAGAGGGAAACCATGGGTATGATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAGTTTTGCTCCTTACAGTCCTAGGAACATGCTTCCGGGTTTTGCTCCTTTGCCGTGGTATAGTAGTGATGGAATATATTCATATGGGTCTAATGCTCAGGGTTGCTGGTACCCTATGGGTGGGTATGGGGGGAACGGATATGCGATTCCGTCTGATGCTTCTAGGAACTTCTGGTACGGGCCAATGATGGCTTGTCCTCAAGCATGTCAGGTGCCTTATGCTAGTGCTGTTCCAAACTTAGCGTATTTTGGAGGTAGGATTGGAATAGTAGGTAGTGGTGTAGGATCTTGGGGGTATGGTGGAATTCTAGGATCTGGAACAAATTTTAAATTTGATCAACCTTTTATTGGCAACGGATTTGTTCCCGGCAATACGACATTATCTTGGTGTAAAGCAGAATGTTGTGGACTCTTCGAGTTTGAAAGGAAGCACTGGTGA 1098 0.4608 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGAVLDSTISLDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLYSRGGGNYSNSCDCGSDTNVRTKKIFVGGLPAGISEEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVRSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFAPYSPRNMLPGFAPLPWYSSDGIYSYGSNAQGCWYPMGGYGGNGYAIPSDASRNFWYGPMMACPQACQVPYASAVPNLAYFGGRIGIVGSGVGSWGYGGILGSGTNFKFDQPFIGNGFVPGNTTLSWCKAECCGLFEFERKHW* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0762 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Pvu9g0762 365 SUPERFAMILY RNA-binding domain, RBD 117 205 IPR035979 GO:0003676
Pvu9g0762 365 Gene3D - 2 97 IPR012677 -
Pvu9g0762 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Pvu9g0762 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 179 IPR000504 GO:0003723
Pvu9g0762 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Pvu9g0762 365 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 346 - -
Pvu9g0762 365 Gene3D - 116 204 IPR012677 -
Pvu9g0762 365 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
Pvu9g0762 365 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 346 - -
Pvu9g0762 365 SMART rrm1_1 11 82 IPR000504 GO:0003723
Pvu9g0762 365 SMART rrm1_1 121 193 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0762 Pvu-Chr9 12273053 12274651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0762 12 258 Eukaryotic Initiation Factors Gene Family AT2G36660 24.715 3.25e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0762 K14411 - gmx:100816822 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0762 9 12273053 12274651 Pvu9g0762 9 12273053 12274651 ECH