Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0753 ATGCCTCCGTACCAAGAAGACCTAGTGGCAACAGAAACAACAACCACCACGAAGGATGCTAATGGTGCTGGCGTTTTGGATCTGAAAACGTTGATTGAGGAGCTTGAGTCATCCATTGAGGTCCCTTCCGTTTTCATCTGCCCAATCTCGCTGGAGCCAATGCAAGACCCCGTCACCCTTTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGCCACAACACCTGCCCCACAACAATGCAAGACCTCTGGGACGATTCCGTCACGCCCAACACCACTCTCCGCCACTTCATCCTCTCCTGGTTCTCGCAGAAGTTCTTGGCCATGAAGAAGAAGCTCGAGGACGTTCAAGGCACCGCCTTGGAGCTCCTCGACACGCTCAAAAGGGTCAAGGGTCAAAACAGAGTTCGCGCCCTCAAACAGCTTCGCAAGCTCGTCGATTCCCACCTCTCCACCAGGAAAACCGTCGAGGAAAACAACGGGCTTGCCTTGATTTCTTCCCTGTTGGGTCCTTTCACCTCGCACGCGGTTGGGTCGGAAGCAATTGGGATTCTTGTGAATTTGGATTTGGGTTCGGAACTGAAGAGAAATCTCATGCAACCCGCCAAGGTTTCTTTGTTGGTGGACATCATGAACGAGGGAACCATCCAGACCAAGATGAATTGCGCCAAGTTGATTCAAACGTTGTTGGTGGAAGGTAACCCCTCCGAGACCGTTGTTTTATCAAGTTTGAGTCTTTTGGTTGGGGTTTTAAGGTTAGTGAGAGATAAAAAACACCCAACAAGCGTTTTAACTGGACTCATATTACTCAAAATCGTGTGTTCGCGTGAATCGGTTAGAAGCACAATTGTAAGCATAGGTGCAGTGCCTCAGCTGATTCAGCTTTTGCCCACTTTGAACAACGAGTGTTTAGAGATAGCCCTTAATATTCTTGAAGTCTTGTCAACACTTCCTGAGGGAAGATTAGCTTTGAAAGAGTGTCCCAATATTATTCCCAGTGTGGTCAAGTTGGTGATGAGAGTCTCAGAAAGTTGCACACAATTCGCATTGTCGATTTTGTGGGCTATTTACAAGCTTGCCCCTGAAGAATGTGCTTCAAAAGCGGTTGAAGCAGGGTTGGCGGCGAAGCTACTTCTAGTGATTCAGAGCGGTTGCAACCCGGTTCTAAAGCAGAAATCTGCGGAGTTTTTGAAAATGTGCAGTTTAGATTACTCTTCTAGCATCTTGATTTCTAAGTGTATGCTTACTGCCACAATACAATGA 1281 0.4785 MPPYQEDLVATETTTTTKDANGAGVLDLKTLIEELESSIEVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQDLWDDSVTPNTTLRHFILSWFSQKFLAMKKKLEDVQGTALELLDTLKRVKGQNRVRALKQLRKLVDSHLSTRKTVEENNGLALISSLLGPFTSHAVGSEAIGILVNLDLGSELKRNLMQPAKVSLLVDIMNEGTIQTKMNCAKLIQTLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSRESVRSTIVSIGAVPQLIQLLPTLNNECLEIALNILEVLSTLPEGRLALKECPNIIPSVVKLVMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSSSILISKCMLTATIQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0753 426 ProSiteProfiles U-box domain profile. 40 114 IPR003613 GO:0004842|GO:0016567
Pvu9g0753 426 SMART Ubox_2 44 107 IPR003613 GO:0004842|GO:0016567
Pvu9g0753 426 Pfam U-box domain 41 111 IPR003613 GO:0004842|GO:0016567
Pvu9g0753 426 CDD RING-Ubox_PUB 45 87 IPR045210 -
Pvu9g0753 426 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 425 - -
Pvu9g0753 426 SUPERFAMILY ARM repeat 119 406 IPR016024 -
Pvu9g0753 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 122 IPR013083 -
Pvu9g0753 426 SUPERFAMILY RING/U-box 38 110 - -
Pvu9g0753 426 Gene3D - 261 416 IPR011989 -
Pvu9g0753 426 PANTHER WDSAM1 PROTEIN 17 425 IPR045185 GO:0061630
Pvu9g0753 426 Gene3D - 123 260 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0753 Pvu-Chr9 12182035 12184171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0753 26 426 U-box Gene Family AT3G49810 63.092 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0753 - - gmx:100808281 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0753 9 12182035 12184171 Pvu9g0753 9 12182035 12184171 ECH