LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g0717	ATGAGTGCTCCGTCGCGAGAAGAGGAGTCGAAGGAGGACGAGAGAGACGAGGAGGCGAACCGGCTTCTAGAGGAAGCAGGAGCGGCATCATCATCATCATTGGGAGAAGATGTGGCATACGAAGCGGGGGAGAAGATCCTGGTGGCGGATTTCGATTTTGACACGGTGGACGATGCGACCGTTCCTCCTTTCTCATGGAAGAAGCTGTGGCTCTTCACTGGGCCTGGGTTCTTGATGAGCATAGCTTTTTTGGATCCGGGGAATCTTGAGGGGGATCTGCAGTCTGGGGCCATCGCGGGCTACTCGCTCCTCTGGCTCTTGATGTGGGCCACCTCCATGGGCCTCTTGATCCAGCTTTTGTCCGCCAGGGTCGGCGTCGCCACGGGCCGCCACCTCGCCGAGCTCTGCAGGGATGAATATCCCCATTGGGCCCGCCTTGTGCTCTGGTTCATGGCCGAGCTGGCTCTGATTGGCGCCGACATTCAAGAGGTCATTGGAAGTGCCATCGCCATCCAAATTCTTAGCCGAGGCTTCTTCCCTCTCTGGGCAGGAGTTCTAATCACTGCTTCCGACTGCTTTTTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTTATTGGTGTTATGGGTCTTTCTTTTGCCTGGATGTTTGCTGACGCAAGACCTAATGGACAAGAACTTTTAATGGGTATTTTGGTTCCGAGACTAAGCTCAAAAACAATTCGTCAAGCTGTGGGTGTTGTGGGTTGTGTCATCATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTTCAATCAAGGAAGGTTGATCCTAAAAAGAAAGGTCGGGTACAGGAGGCTCTCAACTACTATTCAATTGAGTCTTCAGCTGCACTTTCAATCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTTTATGGAACAAAGCAGGCAAAACACATAGGACTGGTCAATGCAGGGCAGTATCTTGAACAAAAGTATGGAGGAGGAGTCTTCCCTATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGCCAGAGCAGCACCATCACTGGCACATATGCTGGGCAATTCATAATGGGGGGCTTCCTCAACCTTCGTTTAAAGAAATGGATGAGAGCATTGATCACTCGAAGTTTTGCTATTGTGCCAACTATAATTGTAGCTATAGTTTTTAATAGATCAGAAGCGTCCTTGGACATTTTGAATGAATGGCTCAATGTGCTTCAGTCCATGCAAATTCCCTTTGCTCTGATTCCCCTCCTCACGTTGGTCTCCAAAGAGCAGGTCATGGGAACCTTTAGAGTTGGACCTGTTCTTGAGAGAGTAGCATGGACTGTTGCTGGACTGATAATAGTGATTAATGGGTATCTCTTGTTAGATTTCTTCATTTCTGAGGTGAATGGCATTTTGCTTGGTCTTTTAGCGTGCTCCTGCACGACAGCATATATTGCGTTCATTGTATATTTGGTTTCACAGAGCGGTATTCTTCCTTCCGCATGGGTTAAGCGTCTTCCCAAGGGATTTTCTTCAACTGGGAATTAA	1587	0.4783	MSAPSREEESKEDERDEEANRLLEEAGAASSSSLGEDVAYEAGEKILVADFDFDTVDDATVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATSMGLLIQLLSARVGVATGRHLAELCRDEYPHWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGFFPLWAGVLITASDCFFFLFLENYGVRKLEAAFAVLIGVMGLSFAWMFADARPNGQELLMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKVDPKKKGRVQEALNYYSIESSAALSISFMINLFVTTVFAKGFYGTKQAKHIGLVNAGQYLEQKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIVPTIIVAIVFNRSEASLDILNEWLNVLQSMQIPFALIPLLTLVSKEQVMGTFRVGPVLERVAWTVAGLIIVINGYLLLDFFISEVNGILLGLLACSCTTAYIAFIVYLVSQSGILPSAWVKRLPKGFSSTGN*	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g0717	528	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	67	445	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	PRINTS	Natural resistance-associated macrophage protein signature	148	174	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	PRINTS	Natural resistance-associated macrophage protein signature	178	197	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	PRINTS	Natural resistance-associated macrophage protein signature	203	224	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	PRINTS	Natural resistance-associated macrophage protein signature	252	275	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	PRINTS	Natural resistance-associated macrophage protein signature	359	378	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	PRINTS	Natural resistance-associated macrophage protein signature	387	404	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	PRINTS	Natural resistance-associated macrophage protein signature	421	440	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	26	516	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	Pfam	Natural resistance-associated macrophage protein	90	451	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	PANTHER	BNAC08G04640D PROTEIN	26	516	-	-
	Pvu9g0717	528	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pvu9g0717	528	Hamap	Divalent metal cation transporter MntH [mntH].	55	477	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu9g0717	528	MobiDBLite	consensus disorder prediction	1	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g0717	Pvu-Chr9	11751008	11755078	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g0717	8	509	Inorganic Solute Cotransporters	AT1G47240	78.770	0.0	811

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g0717	K21398		-	gmx:100795013	931.784

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu9g0717	9	11751008	11755078	Pvu9g0717	9	11751008	11755078	ECH