Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0713 ATGGGGAGAGTGAAGCTTCAGATCAAGAAGATTGAGAACACCACAAACAGGCAAGTCACTTTCTCCAAGAGGAGGAATGGACTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGGTGTTGATGTGGCTCTCATCATGTTTTCCCCATCTGGAAGACCCAGTTTCTTTTCTGGCAACAAAAGCATTGAAGAAATTCTAGAACGATATGTTAACCTTCAGAGTGGTGAACACGGAAGCACGTTCAGAAGTTGCTTGGAGGTTCGAAGAGAAATTTTTACTTGCAAGTCTCAATTGAAAGAGATGGAAGAACGACTAAGGATATTTGAAGGTGATCCTTCCGAGATCACAACGCTGAGAGAGGCTGAATATCGTGAATATGTCCTTCGTCAAACTCTCAAACAAGTGCAATTACGAAAGTGTGTTTTGGAGGAGAATAATTCCGAAGCCTCTCATTCCCCACAGGTACATGGTGCAAAAAGTGTAGATGTAAATAATTTTGTCACCAGCGCCTCAAAGAACCCAGTAGACTGGTTTCCACATGGAAATCCACATGCTCGAACTCTGAACTTTGAGAATGTTTATGACCCTGCTCCTACCAGAGATCAACAACCACATAGCATTGCTGGTGTGTTAACACCAACTTCGAGACTTGTGTATTCTGCAAACATGCATCAGAATGATGAAATGAATCCAAGGAATAGTTTAGACGTTGGCATTAATAATACAATACTGTGTCCTCAGTTTGAACAAACTACTCTTATGAATTCGTCATCTTGGGAGCATCTTCATCCTTTGGGTACTTACTGGTGTTAG 816 0.4142 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCGVDVALIMFSPSGRPSFFSGNKSIEEILERYVNLQSGEHGSTFRSCLEVRREIFTCKSQLKEMEERLRIFEGDPSEITTLREAEYREYVLRQTLKQVQLRKCVLEENNSEASHSPQVHGAKSVDVNNFVTSASKNPVDWFPHGNPHARTLNFENVYDPAPTRDQQPHSIAGVLTPTSRLVYSANMHQNDEMNPRNSLDVGINNTILCPQFEQTTLMNSSSWEHLHPLGTYWC* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0713 271 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu9g0713 271 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pvu9g0713 271 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu9g0713 271 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Pvu9g0713 271 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu9g0713 271 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu9g0713 271 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu9g0713 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Pvu9g0713 271 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pvu9g0713 271 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 83 258 - -
Pvu9g0713 271 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 77 - -
Pvu9g0713 271 PANTHER MADS BOX PROTEIN 83 258 - -
Pvu9g0713 271 PANTHER MADS BOX PROTEIN 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0713 Pvu-Chr9 11714268 11717788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0713 1 147 Type I MADS-box Gene Family AT1G22130 43.617 5.86e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu9g0713 SRF-TF 7.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0713 - - pvu:PHAVU_009G069300g 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0713 9 11714268 11717788 Pvu9g0713 9 11714268 11717788 ECH