Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0677 ATGGACACTGTGGAGCAGTTAAAGCCGGAGGAGAAGCAGCACCAGCAGATGGACATCATGACCATGATGATGCAACACATACCTCAATTCTCTGAACCCTATGGTGACACCAACACCATGGAAGATTTTCACCCCCCCGAGGACTTCTACGGTAACAACAACAATATATGCAGTGGTAGCACTGTGCCTCTAGCAGATTTAGTTGATAATAACCCTCCTAGCCCTATACCTTGGTCCTCTTACTCCTTCACGCACTTATTACCATCGTCCACATCTCCCACCACAATCTCTTTCTCCGACAACAACAACAACAACCCTTCCCCAATAATGCTTCAACAAACCCCAACCGAGGGTGCAACTGTAAACCCTTACGGTGAGAAGCGGAACTCCATGGCGGCGATGAGGGATATGATATTCAGGATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGCCGCCGAAGCGGAGGAACGTGAAGATTTCGAAGGACCCTCAGAGTGTGGCAGCGCGGCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATACTGCAGAGACTGGTCCCTGGAGGGACCAAGATGGACACTGCGTCCATGTTGGATGAGGCCATTCACTACGTTAAGTTTCTGAAAACGCAGGTTCAGTCGCTGGAACGCGCTTCCTCTAACAATATTAGGCCACTTGTCGGTGTTAACGCACCAGGGATAGGGTTCCCTGTTGCTATGTCTGGTTCTATTAGGACTGCTACCACCTCCACTTCCAATTCCACCCCTTATTTTCCTCTGCCTAATTCATATCATTAA 813 0.5018 MDTVEQLKPEEKQHQQMDIMTMMMQHIPQFSEPYGDTNTMEDFHPPEDFYGNNNNICSGSTVPLADLVDNNPPSPIPWSSYSFTHLLPSSTSPTTISFSDNNNNNPSPIMLQQTPTEGATVNPYGEKRNSMAAMRDMIFRMAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASSNNIRPLVGVNAPGIGFPVAMSGSIRTATTSTSNSTPYFPLPNSYH* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0677 270 Pfam Helix-loop-helix DNA-binding domain 173 213 IPR011598 GO:0046983
Pvu9g0677 270 SMART finulus 170 219 IPR011598 GO:0046983
Pvu9g0677 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Pvu9g0677 270 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 254 IPR045843 GO:0003700|GO:0006355
Pvu9g0677 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 222 IPR036638 GO:0046983
Pvu9g0677 270 MobiDBLite consensus disorder prediction 90 120 - -
Pvu9g0677 270 CDD bHLH_AtIND_like 165 221 - -
Pvu9g0677 270 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 4 254 - -
Pvu9g0677 270 MobiDBLite consensus disorder prediction 90 124 - -
Pvu9g0677 270 Gene3D - 163 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0677 Pvu-Chr9 11226348 11227160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0677 131 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 93.407 1.75e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g0677 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0677 - - vra:106761667 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0677 9 11226348 11227160 Pvu9g0677 9 11226348 11227160 ECH