Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0640 ATGGCCTCGGGCTGCTTTCTATTGCTCTCCCTATTCCTCTTCTCATCATTGTCATCTTCCTCCTATGCACTTTCCGATGTTGAAGCCTCTTTCATTGCTCGTCGACAATTGATGCACTTGAATGAGAATGAGGACTTGCCCAGCAACTACGTAAGTAACTATAAAACAAACTTTAAATTCTCTAACTCTAGACTAAAAAGTGCATACATTGCACTTGAGGCCTGGAAAAAAGCTATCTACTCAGACCCCTCCAATTTCACATCAAATTGGTCGGGCCAAGATGTTTGCTCCTACAATGGAGTTTTCTGTGAAAAGGCTCTAGATGACCCAAAGATCGAAGTTGTGGCAGGGATTGACCTTAACAATGCAGACATCGCAGGTTACATTCCCCCAGAAGTTGGTCTGTTAGTTGACCTTGCACTTTTGCATATAAACTCCAACAGGTTTTGTGGGATTATCCCACACAGCTTTTCCAATCTTAAGATTCTCTATGAGCTAGACATCAGCAACAACCGCTTTGTAGGGCAGTTCCCTGAAACCGTGCTTTCAATTCCAGACCTCAAATTCCTTGACATCAGGTTCAATGACTTTGAAGGGGAACTGCCTTCTGATCTTTTCGAAAAAAGTTTCGATGCTATATTTTTGAACAACAACCGCTTCACGTCCACCATTCCTCAGAACCTAGGATCAACTCCAGCCACGGTTGTGGTTATGGCCAATAACAATCTCTCAGGGTGCGTGCCTGCCAGCATTGGCGACATGAAGTCATTGAACGAGTTTATTTTGATCAACAACAACCTCATGGGTTGCTTGCCAACAGAAATTGGAAATCTCGAAAAAGTTTCAGTGTTTGACATAAGCAACAACAACTTCGTTGGCGTGTTGCCCAAGACCTTAAATGGGCTGAAGAATGTTGAGCACTTGTCCATTTCACATAACAAATTTACAGGTTTTGTCCCGCGTAATGTTTGCAGCTTGCCCCATTTGATGAACTTCACATTCTCCGATAACTATTTCAACGGAGAGGAAGAGGGTTGCTCACCTCAAAAGAAAGAGCCGGCATTGGACGATGAGAACAATTGCATACCAGATAGGCCAAAGCAAAAACAGTCAAACGCTTGCAATGAGGTGATAAGCAAGCCTGTGGATTGTAGCAAAGACAAGTGTGGCCATGGGAGCCCTCCATCTTCTTCTCCAAAAACTCCTCCAACACATACCCCAACTCCAAAGCAAGAAACCCCTACCCCTCAACAACCCAAACCCTCACCACCACCAGAGGACAATTCCCACGAGGAAGCACCCAAGCACCACGAAAGATCTCCACCACCGCCTGTCCACTCTCCTCCTCCTCCTGTCCACTCCCCACCACCACCTGTTCACTCCCCACCACCTCCTGTCCATTCTCCACCACCACCTGTTCACTCTCCACCTCCACCTGTTCACTCACCTCCACCACCGGTTCACTCACCACCACCACCACCCGTTCACTCCCCACCTCCACCCGTTCATTCTCCTCCCCCACCCGTCCACTCTCCTCCTCCACCCGTCCATTCCCCTCCCCACCCGTCCACTCTCCTCCTCCACCCGTCCACTCTCCTCCTCCCCCAGTTCACTCTCCACCACCTCCTGTCCATTCCCCACCTCCCCCAGTTCACTCTCCACCACCACCAGTTCACTCTCCTCCTCCCCCGGTTCACTCTCCTCCGCCACCTGTTCACTCTCCACCACCTCCAGTGCACTCTCCACCGCCACCGGTGCAACCTCCTCCACCTGCTTCGCCTCCTCCTATGGAAGACGTCTTCCTTCCCCCTCACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCCATCATTGCCGGCTACTAGAAGGGTTGCACATATTTCTACCATTTATACTAGTTCCTAG 1905 0.494 MASGCFLLLSLFLFSSLSSSSYALSDVEASFIARRQLMHLNENEDLPSNYVSNYKTNFKFSNSRLKSAYIALEAWKKAIYSDPSNFTSNWSGQDVCSYNGVFCEKALDDPKIEVVAGIDLNNADIAGYIPPEVGLLVDLALLHINSNRFCGIIPHSFSNLKILYELDISNNRFVGQFPETVLSIPDLKFLDIRFNDFEGELPSDLFEKSFDAIFLNNNRFTSTIPQNLGSTPATVVVMANNNLSGCVPASIGDMKSLNEFILINNNLMGCLPTEIGNLEKVSVFDISNNNFVGVLPKTLNGLKNVEHLSISHNKFTGFVPRNVCSLPHLMNFTFSDNYFNGEEEGCSPQKKEPALDDENNCIPDRPKQKQSNACNEVISKPVDCSKDKCGHGSPPSSSPKTPPTHTPTPKQETPTPQQPKPSPPPEDNSHEEAPKHHERSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPHPSTLLLHPSTLLLPQFTLHHLLSIPHLPQFTLHHHQFTLLLPRFTLLRHLFTLHHLQCTLHRHRCNLLHLLRLLLWKTSSFPLTSALLMLHPLHPSLPATRRVAHISTIYTSS* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0640 634 Pfam Leucine rich repeat 281 337 IPR001611 GO:0005515
Pvu9g0640 634 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Pvu9g0640 634 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 2 523 - -
Pvu9g0640 634 MobiDBLite consensus disorder prediction 443 522 - -
Pvu9g0640 634 MobiDBLite consensus disorder prediction 342 523 - -
Pvu9g0640 634 SUPERFAMILY L domain-like 71 361 - -
Pvu9g0640 634 PRINTS Proline rich extensin signature 398 419 - -
Pvu9g0640 634 PRINTS Proline rich extensin signature 421 437 - -
Pvu9g0640 634 PRINTS Proline rich extensin signature 440 457 - -
Pvu9g0640 634 PRINTS Proline rich extensin signature 458 483 - -
Pvu9g0640 634 MobiDBLite consensus disorder prediction 396 424 - -
Pvu9g0640 634 MobiDBLite consensus disorder prediction 345 364 - -
Pvu9g0640 634 Gene3D Ribonuclease Inhibitor 233 360 IPR032675 -
Pvu9g0640 634 Gene3D Ribonuclease Inhibitor 67 232 IPR032675 -
Pvu9g0640 634 MobiDBLite consensus disorder prediction 425 442 - -
Pvu9g0640 634 Pfam Leucine rich repeat N-terminal domain 70 103 IPR013210 -
Pvu9g0640 634 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 2 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0640 Pvu-Chr9 10893577 10895786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0640 4 390 Trihelix Transcription Factor Family AT3G19020 61.340 2.93e-172 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0640 - - gmx:100780677 622.083