Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0603 ATGGGTTGGACACGAGAAGAGAATAGACGTTTTGAGGATGCTCTTGCTGTTCATGGCCCTGATGACCCAAATCGGTGGCAACATGTAGCTGATGCCGTGGGTGGAAAATCCGTACAAGAGGTGAAAATGCACTATGAGATCCTCCAGGAAGACGTCATTCGAATTGAGCGAGATCAAATCCCACTACCCAGGTACAGAGGTGCCAGCATCAATGGAAGACAAATTGACAATGAGCAAAGGAGAATGAGGAATCTGACTCTCCGATGA 267 0.4757 MGWTREENRRFEDALAVHGPDDPNRWQHVADAVGGKSVQEVKMHYEILQEDVIRIERDQIPLPRYRGASINGRQIDNEQRRMRNLTLR* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0603 88 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Pvu9g0603 88 Coils Coil 75 88 - -
Pvu9g0603 88 CDD SANT 3 45 IPR001005 -
Pvu9g0603 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 66 IPR044636 GO:0003700
Pvu9g0603 88 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Pvu9g0603 88 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Pvu9g0603 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 66 - -
Pvu9g0603 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Pvu9g0603 88 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Pvu9g0603 88 SMART sant 3 51 IPR001005 -
Pvu9g0603 88 Gene3D - 2 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0603 Pvu-Chr9 10572585 10574122 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu9g0603 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0603 - - gmx:100789698 164.081