Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0575 ATGGCAAGTGGGTTTGGGGAATCAACTGGGAGGTCACCCCCAAGCCCTTCATACTTCAACAACAATAATAATAGCAATGATGCTGGGAATTTTGAGTGCAACATTTGCTTTGAATTAGCGCAAGACCCCATAATTACTTTGTGCGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCGGTTTGCAAGGCCCTCGTGGAAGAGGACAAGCTGGTTCCCTTGTATGGGAGAGGAAAAACCTCCACTGATCCAAGATCAAAGTCTATTCCGGGCATGAATATCCCAGATCGCCCGGCCGGTCAGAGACCTGAAACTGCTCCTCCACCAGAAACAAATAGTTTTCACCCACATGGGTTTGGATTTATGAGTGGCTTTGCACCACCGCCAATGGCAACAACAAGATTTGGGAATTTCGGATTGCCCGCAGCTTTTGGTGGTTTTATACCGTCCTTTCTCAACTTTCAGTTGCATGGGTTTCACGATGGGGCCTTGTATCGGGGAGCCTCTGGTTTTCCTCATGGATTTTCTAGTACATTTCATGGTGTTCATGCTCACGGATATCCTCTTCGCACTCATCAAAGTCAGCAAGACTATTATTTGAAGAACCTGCTTCTAGGTGTTGTTTTCTGTGTTCTTCTTGCTTTTATTTGGCAATAG 690 0.4594 MASGFGESTGRSPPSPSYFNNNNNSNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEDKLVPLYGRGKTSTDPRSKSIPGMNIPDRPAGQRPETAPPPETNSFHPHGFGFMSGFAPPPMATTRFGNFGLPAAFGGFIPSFLNFQLHGFHDGALYRGASGFPHGFSSTFHGVHAHGYPLRTHQSQQDYYLKNLLLGVVFCVLLAFIWQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0575 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pvu9g0575 229 SUPERFAMILY RING/U-box 30 86 - -
Pvu9g0575 229 MobiDBLite consensus disorder prediction 87 121 - -
Pvu9g0575 229 MobiDBLite consensus disorder prediction 1 21 - -
Pvu9g0575 229 PANTHER OS12G0636000 PROTEIN 2 229 - -
Pvu9g0575 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 87 IPR013083 -
Pvu9g0575 229 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Pvu9g0575 229 Pfam Zinc finger, C3HC4 type (RING finger) 33 73 IPR018957 GO:0046872
Pvu9g0575 229 SMART ring_2 33 73 IPR001841 -
Pvu9g0575 229 CDD RING-HC_AtRMA_like 31 75 - -
Pvu9g0575 229 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0575 Pvu-Chr9 10297366 10299032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0575 31 212 C3H Transcription Factor Family AT1G19310 62.176 2.08e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0575 K10666 - gmx:100794086 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0575 9 10297366 10299032 Pvu2g0266 2 2795350 2796863 ECH
Pvu9g0575 9 10297366 10299032 Pvu9g0575 9 10297366 10299032 ECH