Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0562 ATGAACTATATATTTCTTCTCCTTGTCACATTGAAGATTTTCAAGAGGAAGTTGACACAGTTACAAGAGATTATGGGATTTCAAACATCACATACCACTAAATGGATGTCACAACCAATTTTCAAAGCAAAGGAAGACCCCATTGATGTTCATGAAAACTCATTAATCCAAAGAACAGCACTGAATTTGATTGATCATTCAGAAACCAATACCAATTACATTTTGTCTGGCTATGATTCATGGGTGACAAGACACCCTTCGGCATTGAAATCATTTGAAAGGTTGATGAAAGCAGCCATAGGGAAGAGGATCATCATTTTTTTGGATTACGATGGTACCTTATCCCCGATTGTAAATGATCCTGAACGTGCTTTCATGTCTGATGAGATGCGTGCAGCTGTATGTGAAGTTGCTACGTATTTTCCAACAGCAATAATCAGTGGAAGAAGCAGAGATAAGGTAAAAGATTTCGTGAAGTTAAATAATTTATATTATGCTGGAAGCCATGGCATGGACATAATGGCACCATCAATGCCAGTTACATCCTCTGCAGGCGAGCATATTGATATTGCCATTAACAAAAGTGGCACAGAAGTTCCCTTTCAACCTGCCAAGAAGTATTTGCCAGCAATTCGAGAGATATTAAGAATACTAAAGATTGAAGTAAAGGAAATCAAAGGAGCAATGATTGAGGACAACGGATTCTGCATCTCTGTACACTTCCGGCAGGTCCAAGACGAGGATTATGATCTTTTGGAAATGAAAGTGAAGTCTGTGCTTGAAAATCATCCACAATTTTGCTTGACAGAGGGTAAAAAGGTTATGGAAATAAGGCCTTCTATAAAGTGGAACAAAGGAAATGCTGTAGAATATTTTCTTGACACATTAGGATTAAGCAGTTGCAATGATATCCTTCCTGTGTATATTGGAGATGATAGAACTGATGAAGATGCTTTTAAGGTCATACAGAGTAGAGAGCAAGGTTATCCAATTATAGTGTCTTCAATTCCAAGAGAAACTAAAGCTTTGTACTCTTTGCGTGACCCATCGGAAGTACTAATCTTTCTGTCACGTTTGGCAAAGTGGAGGAAAACCGCTTACTAA 1104 0.3804 MNYIFLLLVTLKIFKRKLTQLQEIMGFQTSHTTKWMSQPIFKAKEDPIDVHENSLIQRTALNLIDHSETNTNYILSGYDSWVTRHPSALKSFERLMKAAIGKRIIIFLDYDGTLSPIVNDPERAFMSDEMRAAVCEVATYFPTAIISGRSRDKVKDFVKLNNLYYAGSHGMDIMAPSMPVTSSAGEHIDIAINKSGTEVPFQPAKKYLPAIREILRILKIEVKEIKGAMIEDNGFCISVHFRQVQDEDYDLLEMKVKSVLENHPQFCLTEGKKVMEIRPSIKWNKGNAVEYFLDTLGLSSCNDILPVYIGDDRTDEDAFKVIQSREQGYPIIVSSIPRETKALYSLRDPSEVLIFLSRLAKWRKTAY* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0562 367 SUPERFAMILY HAD-like 105 364 IPR036412 -
Pvu9g0562 367 TIGRFAM T6PP: trehalose-phosphatase 102 361 IPR003337 GO:0003824|GO:0005992
Pvu9g0562 367 Pfam Trehalose-phosphatase 107 350 IPR003337 GO:0003824|GO:0005992
Pvu9g0562 367 CDD HAD_TPP 106 352 - -
Pvu9g0562 367 Gene3D - 197 367 IPR023214 -
Pvu9g0562 367 Gene3D - 104 196 IPR023214 -
Pvu9g0562 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 64 365 IPR044651 GO:0004805|GO:0005992
Pvu9g0562 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 64 365 - -
Pvu9g0562 367 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 105 322 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0562 Pvu-Chr9 10121719 10130321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0562 102 360 Trehalose Biosynthesis Gene Families AT1G70290 28.520 2.56e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0562 K01087 - gmx:100819120 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0562 9 10121719 10130321 Pvu9g0562 9 10121719 10130321 ECH