Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0557 ATGAAAATCCCCAATCCTATACTCACTTTCTTCATCCTCTTCAACCCTCTCGTAGTTGTGGCAATCATAGAAACATGTTCAGACAGCATCTGTGAAGGTGGTGAACCACTAATCCGATTCCCCTTCCTCATAAAAGGAAAACACGCAGAACCATGCGGATATCCAGGCTTCATAGTCTCCTGCACCCAGAACCAGAACGCCCAAACACTCCTCAACCTACCAAATTGGGGCCCACTCAAAATCCAAACTATAAACTACGCCGCGCAGCAACTCTGGGTCAACGATCCCAACAACTGCCTCCCCAAACACCTCCTCTCTCTCAATCTCTCCACCTCTCCCTTCCGCGCCGTTTACCACCAGCAGTTCACCTTCTTCAACTGCTCCGCCAATTTGGACAACCTCGTTCATCGATACCGTCCCATAGGTTGTCTCAGCGATTCTCCCAACTACGTCGTTTTCGCAACACCTTCTACTACTGTGGTTCGCCACTTATCTTCTCTGTGTCATCTAGTGGCGAGGGTGAACGTGCCTGTGCAGTCACCGTTTTACGATCAAGTCAAGTCCTCGGAACTCGGCGAGGATCTGCGCTTGTCGTGGGACTCGCCGGCGTGCGGGAGGTGCGAGTCCCGCGGTGGCCGGTGCGGCTTCAAGAGTGACGACACTTTTGAGCTTGACTGCTCTGGTATCCCTTCGAAAGGGATTTCCCGTGGTGGCCGTTACGCCATAGCCATATGCATAGGGGTACCAGCTATGTTATGCTCCTTTGGAGTATTGAGTTGCATCTGCAGGTGGCTGAAAGTGGGGAACCACGATGGACCTTGGGCTCACGAAAGTGTGGCAGATTTTGAGGCTCTTGTGGGCTCACGGCCCACAACAGTGTTGGGCCTGGACAGACCAACAATCGAATCGTACCCAAAAATAGTTATAGGTGAGAACAGACGGTTACCTAAGAAGGGTGAGAAAAGATGCTCAATATGTCTCTCAGAGTACATGCCAAAGGAGACAGTGAAAAGCATACCTGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCCTCCTGCCCAATTTGCAGAACTTCTCCCCAAAAGTTTCCACAACCGCGTGCTCGATCATCACCATAG 1143 0.5109 MKIPNPILTFFILFNPLVVVAIIETCSDSICEGGEPLIRFPFLIKGKHAEPCGYPGFIVSCTQNQNAQTLLNLPNWGPLKIQTINYAAQQLWVNDPNNCLPKHLLSLNLSTSPFRAVYHQQFTFFNCSANLDNLVHRYRPIGCLSDSPNYVVFATPSTTVVRHLSSLCHLVARVNVPVQSPFYDQVKSSELGEDLRLSWDSPACGRCESRGGRCGFKSDDTFELDCSGIPSKGISRGGRYAIAICIGVPAMLCSFGVLSCICRWLKVGNHDGPWAHESVADFEALVGSRPTTVLGLDRPTIESYPKIVIGENRRLPKKGEKRCSICLSEYMPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPQKFPQPRARSSP* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0557 380 SMART ring_2 323 364 IPR001841 -
Pvu9g0557 380 Pfam Wall-associated receptor kinase galacturonan-binding 26 95 IPR025287 GO:0030247
Pvu9g0557 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 370 IPR013083 -
Pvu9g0557 380 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 375 - -
Pvu9g0557 380 SUPERFAMILY RING/U-box 318 370 - -
Pvu9g0557 380 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 375 - -
Pvu9g0557 380 ProSiteProfiles Zinc finger RING-type profile. 323 365 IPR001841 -
Pvu9g0557 380 Pfam Ring finger domain 322 365 IPR001841 -
Pvu9g0557 380 Pfam Wall-associated receptor kinase C-terminal 166 226 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0557 Pvu-Chr9 10072456 10073921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0557 24 368 C3H Transcription Factor Family AT2G46495 35.854 2.04e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0557 - - vun:114163980 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0557 9 10072456 10073921 Pvu9g0557 9 10072456 10073921 ECH