Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0554 ATGTCGTCGACCGTGCTGGAAGTGACGCGGGCGGCACACGAGGAGGTTGAGCGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGAGCCTGGCACCAACAAGGAGCGTTTGTATCAGAGTCACCGTGTGCGAAACATGATCGATACCATTACCTCCACCACTGAAAAGCTTACTGGAATATATGAGGATAACGACAATGCGAGGAAGGACGAGATTGCTGCACTCGGAGGCCAAACTGCCTCTGGAATTAACGTTTTCAGTGCCTTTTATGATAGACTAAAGGAGATACGAGAGTATCATAGGAAGCACCCGGTTGCACGTGTTGTTGACGCCAATGATGATTATGAAACGGTTCTCAAAGAAGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTCTTGGTCGATACTTAGACCTGCATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGAGAGCCACTTGAGTATTCTGCATATGTTGATGTTTTCTCAGACACAAATAAGATTCCCCGCAAAATGAAAATGACCAGACAGTACCGAGAATATATGGTGAATCTTTTGGAGTATCTGATATACTTTTTCCAGCGTACCGAGCCCCTGCAAGATCTTGATCGAATTTTCTCAAAGGTAACAACTGAATTTGAAGAAAATTGGGCTGCTGGAAAGGTACGGGGATGGGAAAATGACAATCAGGAGAATGGACATGTACCTGCTGAGCATTCTACCATTGATCTTGATTATTACAGTACTGTTGAAGAGCTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCTCTGGCTGCATTGGGGCTTAAGACTGGTGGTACTATCCAGCAACGGGCTGAGAGGCTCTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGAGAGAAAGCATTTTGCTAAGGGGACACGTGGTGTAGAAAAGAACAGGGTTGCTGCAGTTCCACAAGAAGATGGAAATTCTAAAGAAATTGCATTGATGGAAGCTAAAATGGAAAAACTGTGTGATTTGTTAGAGGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAACAGGCCCTAACATATGAAGAAATGGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACACTGAAAGCGAAGATGACGAGCAGCAGATATATAATCCCCTAAAATTACCAATGGGGTGGGATGGAAAACCTATACCTTATTGGCTATATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTATAGTTATTGGGGCCGTCGGGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATTCCGAATACCAAGAATTTCAATGAAATCACATCAATTGAGGAAGCAAAGGACCTTTGGAAGAAGATACAGCAAAGACAAGGAGTAAACAAGTGGCGCCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAAAAGACATACACTGACTTACAGCGCCAGGGACTGATCTGA 1530 0.4366 MSSTVLEVTRAAHEEVERLERLIVKELQNEPGTNKERLYQSHRVRNMIDTITSTTEKLTGIYEDNDNARKDEIAALGGQTASGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYETVLKEEPQIEFSGEEALGRYLDLHELYYQYVNSKFGEPLEYSAYVDVFSDTNKIPRKMKMTRQYREYMVNLLEYLIYFFQRTEPLQDLDRIFSKVTTEFEENWAAGKVRGWENDNQENGHVPAEHSTIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEKLERKHFAKGTRGVEKNRVAAVPQEDGNSKEIALMEAKMEKLCDLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDTESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0554 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Pvu9g0554 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398|GO:0003723|GO:0005681
Pvu9g0554 509 PANTHER SPLICING FACTOR SF3A-RELATED 1 509 - -
Pvu9g0554 509 Coils Coil 331 351 - -
Pvu9g0554 509 MobiDBLite consensus disorder prediction 361 382 - -
Pvu9g0554 509 PANTHER BNAA03G01920D PROTEIN 1 509 - -
Pvu9g0554 509 Coils Coil 353 380 - -
Pvu9g0554 509 Pfam Replication stress response SDE2 C-terminal 223 304 - -
Pvu9g0554 509 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Pvu9g0554 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676|GO:0005634|GO:0008270
Pvu9g0554 509 MobiDBLite consensus disorder prediction 363 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0554 Pvu-Chr9 10031989 10040231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0554 1 509 C2H2 Transcription Factor Family AT5G06160 73.477 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0554 K12827 - gmx:100815393 955.666