LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g0525	ATGGCCCTGTCAACTCCACACATGCAAAGATTCCTCTTATGCAAGCTCCATACTCGCTCCACCTCTAAGACCACACACAAAAACACCTTCACCACCACCACCAGGGGCCGGTGCTGCTCTGCCATAGCCATCGATGCTCCATCGTCTTTGACTGAGGTGCCCGGTGTGAGATGGGGGTCCATAGCCTTGCAGGGTCTTCGTGAAGAGATGGAGGACGACATCATTGTTCGACCCGATGGCCTTCAGGGCTTCTCTTTCGCGGCTGTCTTCGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGATTACTATTAGTGCAGAAAGATTTCAAAGCCGCTAAAGGAGCATTGCAGGAGGCATTTCTCAAGGCAGACACGAGGTTACTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACAGCAACTGCCGTTTTCATCGGAGGTGATGAGCTTCTAATTTCACACATCGGTGACTCCTCAGCGGTTCTATGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCATATGGGAGCAACAAAACTTCTCTTAATGAAATTAGAAGAATCAGAGAAGCAGGTGGATGGATTAGCAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACATGCGATTCAAAACGAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAAATGGTCAGCAAAGTTCATCTCTCGTGTACAGCTCAACAATGACTTGGTTGTAGCATACCCTGATATTTATCAGGTAGCTCTTGGCTCTGATGCAGAATTTATAGTATTAGCAACCGATGGCTTATGGGATTACATCAGCAGCTCAGAAGCAGTTTCTTTAGTTAGGGATCAACTACGAAAACATGGAAACATTCAGCTAGCATGTGAATCGCTTGCAGAAGCCGCTTTGGATAATGTCAGCATTATAATTGCCGATTTAGGGCGGACAGACTGGCTGAATGTGCCACTGGAGCAACAAAATTCTATAGTTGAGCTGGTTCAAGCTCTTGCTACCATTGGAATTGTGTCTTTTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG	1146	0.4616	MALSTPHMQRFLLCKLHTRSTSKTTHKNTFTTTTRGRCCSAIAIDAPSSLTEVPGVRWGSIALQGLREEMEDDIIVRPDGLQGFSFAAVFDGHGGFSSVEFLRDELYKECVEALQGGLLLVQKDFKAAKGALQEAFLKADTRLLKRLEMNGEEDESGATATAVFIGGDELLISHIGDSSAVLCRSGKAEVLTSPHRPYGSNKTSLNEIRRIREAGGWISNGRICGDIAVSRAFGDMRFKTKKNEMLQKGVQEGKWSAKFISRVQLNNDLVVAYPDIYQVALGSDAEFIVLATDGLWDYISSSEAVSLVRDQLRKHGNIQLACESLAEAALDNVSIIIADLGRTDWLNVPLEQQNSIVELVQALATIGIVSFGIWFSSQLSL*	382

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu9g0525	381	ProSiteProfiles	PPM-type phosphatase domain profile.	57	340	IPR001932	-
Pvu9g0525	381	Gene3D	-	56	345	IPR036457	-
Pvu9g0525	381	Pfam	Protein phosphatase 2C	59	332	IPR001932	-
Pvu9g0525	381	SUPERFAMILY	PP2C-like	49	341	IPR036457	-
Pvu9g0525	381	CDD	PP2Cc	64	340	IPR001932	-
Pvu9g0525	381	PANTHER	PROTEIN PHOSPHATASE 2C 57	7	377	-	-
Pvu9g0525	381	PANTHER	PROTEIN PHOSPHATASE 2C	7	377	IPR015655	GO:0004722\|GO:0006470
Pvu9g0525	381	SMART	PP2C_4	47	338	IPR001932	-
Pvu9g0525	381	ProSitePatterns	PPM-type phosphatase domain signature.	86	94	IPR000222	GO:0043169

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g0525	Pvu-Chr9	9594653	9598970	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g0525	1	322	PP2C-type Phosphatase Gene Family	AT4G27800	61.846	4.39e-141	402

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g0525	K04457		-	vra:106776113	688.723

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu9g0525	9	9594653	9598970	Pvu9g0525	9	9594653	9598970	ECH
	Pvu9g0525	9	9594653	9598970	Pvu1g0184	1	1530981	1533040	PCT

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