LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g0518	ATGGGGCATTGTTGCAGCAAAAACATCGCCGTCAACAACGAGACGGTGCCCGCAGATCACCGCCCCAAGACGCCGCATTACGCGCCGCCGTCTCCACCGCCGGCTTCGGGGAGCTCACTATCCGGCGCGACGCCTGGGAGGAACACACCGGCGCACTCGTTTTCCACGAGCCCCTTCCCGAGCCCTCTCCCGCCCGGAGTGGCGCCGTCGCCAGCGAAGACGCCAGGGAGGAAGTTCCGGTGGCCTCTGCCTCCGCCTTCTCCGGCGAAGCCGATCATGGCGGCGCTGCTGCGGCGGCAGGGGAAGGCGAAGCCGAAGGAAGGACCTATACCGGAGGAGCAAGGGGAGGGTGGCGGTGAGGGAGAGAGGTCGCTGGATAAGAGTTTCGGTTATGGGAAGAATTTTGGGGCGAAGTTCGAGTTGGGGAAGGAAGTTGGTCGAGGGCATTTCGGTCACACTTGTTGGGCCAAAGGGAAGAAGGGTGAACTTAAGGGACAATCCGTTGCTGTAAAAATCATATCCAAAGCTAAGATGACTTCAGCCATAGCAATTGAAGATGTGCGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGACATAAGAATTTGGTCAAGTTTTATGACGCATTTGAGGATGTCAACAACGTCTACATTGTTATGGAATTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTAGATAGAGGTGGGAGATACCCAGAGGATGATGCCAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCATTTTGTCATCTTCAGGGAGTTGTTCACCGTGATCTAAAACCAGAGAATTTTCTATTTGTCTCTAAAGACGATGATGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAGACCAACGCCTGAACGATATTGTTGGCAGTGCATACTATGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGGAGACTTGTGGAGTATTGGGGTTATATCGTACATATTGTTATGTGGGAGTAGACCATTTTGGGCACGCACTGAATCTGGAATTTTCCGGTCTGTGTTACGAGCGAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTGAAGAGACTTCTGAACAAGGACCACAGAAAAAGGATGACTGCTGCTCAAGCTTTAGCTCACCCATGGTTGAGAAATGAAAAGAATCCCATTCCTTTGGATATTTTGATTTACAAGTTAGTAAAGTCATATGTGCGTACCTCACCTTTGAGACGTGCAGCATTGAAGGCCCTGGCGAGAGCATTGCCGGAAGATGATCTAATCTACCTTAGAGCACAGTTTAATCTCTTGGAGCCTAAAGATGGCTGCATTTCGCTTGAGAATTTTAGAGTTGCTCTCATGAAAAATGCAACTGATGCCATGAAGGAATCAAGGGCCCCTGACATTTTAAATCTGATGGAGGCACTCTCGTATAAAAAAATGGATTTCGAAGAGTTTTGCGCAGCTGCTATCAGTGTATACCAGCTGGAAGTTCATCAAGAATGGGATAGAATTGCTACCACAGCTTTTGAATATTTTGAGGAGACAGGAAACCGAGTCATTTCTGTTGAGGAGTTGGCTCAGGAGATGAGTTTGGGTCCGTCAGCTTATTCTTTAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTCGGATATACAAAGTTTTTGCATGGTGTCACAATGCGTACTTCAAATACAAGACACCGACAGCTAGTATAA	1782	0.4742	MGHCCSKNIAVNNETVPADHRPKTPHYAPPSPPPASGSSLSGATPGRNTPAHSFSTSPFPSPLPPGVAPSPAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKAKPKEGPIPEEQGEGGGEGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGELKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHKNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYPEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKDDDAVMKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKNPIPLDILIYKLVKSYVRTSPLRRAALKALARALPEDDLIYLRAQFNLLEPKDGCISLENFRVALMKNATDAMKESRAPDILNLMEALSYKKMDFEEFCAAAISVYQLEVHQEWDRIATTAFEYFEETGNRVISVEELAQEMSLGPSAYSLMGDWIRKSDGKLSLVGYTKFLHGVTMRTSNTRHRQLV*	594

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g0518	593	CDD	STKc_CAMK	138	400	-	-
	Pvu9g0518	593	MobiDBLite	consensus disorder prediction	100	126	-	-
	Pvu9g0518	593	ProSitePatterns	Protein kinases ATP-binding region signature.	145	171	IPR017441	GO:0005524
	Pvu9g0518	593	Gene3D	Phosphorylase Kinase; domain 1	133	228	-	-
	Pvu9g0518	593	Gene3D	Transferase(Phosphotransferase) domain 1	229	417	-	-
	Pvu9g0518	593	PANTHER	CDPK-RELATED KINASE 3-LIKE ISOFORM X1	49	584	-	-
	Pvu9g0518	593	MobiDBLite	consensus disorder prediction	1	126	-	-
	Pvu9g0518	593	MobiDBLite	consensus disorder prediction	37	56	-	-
	Pvu9g0518	593	Pfam	Protein kinase domain	139	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu9g0518	593	Gene3D	-	440	508	-	-
	Pvu9g0518	593	ProSiteProfiles	Protein kinase domain profile.	139	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu9g0518	593	SMART	serkin_6	139	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu9g0518	593	SUPERFAMILY	EF-hand	433	578	IPR011992	-
	Pvu9g0518	593	Gene3D	-	418	548	-	-
	Pvu9g0518	593	SUPERFAMILY	Protein kinase-like (PK-like)	138	425	IPR011009	-
	Pvu9g0518	593	MobiDBLite	consensus disorder prediction	57	71	-	-
	Pvu9g0518	593	PANTHER	SERINE/THREONINE-PROTEIN KINASE	49	584	-	-
	Pvu9g0518	593	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	263	275	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g0518	Pvu-Chr9	9425921	9432769	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g0518	1	584	EF-hand Containing Proteins	AT3G50530	57.504	0.0	715

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Pvu9g0518		Pkinase	1.6e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g0518	-		-	var:108331904	1079.32