Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0513 ATGGAGGGAGATGAGAATATTCAAGCATCAAAGGGAAAAAATGTTGAAAGTTTCGCCTGCTTGGAGGCATCAAGGAAGAAAAACAAGAAGATAGAAAACAAAAGGAGGTTTAGTGATGAGCAGATAAGATCACTAGAATGCATATTTGAGACAGAGTCGAAGCTTGAGCCAAGGAAGAAGATGCAACTGGCAAGAGATCTTGGCCTGCAGCCTCGCCAAGTTGCCATATGGTTCCAAAACAGAAGGGCAAGGTGGAAATCAAAACGCATAGAGCAAGAATACAGGAAACTCAAGGATGAATATGACAATTTAGCGTCTAGGTTTGAGTCCCTAAAGAAAGAGAAGGAGTCTTTGCAAGTAGAGTTGCAGAAGCTAAGTGATTTGGTGGAATCATCTCATGATGGTGGAAGGGAAGACAAGGGTGCCAAAGAACACAGCATAGAGGATGGTGGTTCAGGCAGTGGATACAGCAGTTGGAAGCCTGAAGCAAAACCAAGGTTTTCAACTGAGGGTGTGGAAGAGAGAGTAGGTGTGTATTCAGATGATCAAAATGAGAATAGCATCATAAGGAGTGAGAAATCTGAGGACAAAGGACACCAACTTCTCAGAGTGGATGATAATGATCAGGCTGAGATACCATTAGCATCACTAGAAAAATGGTACAGTAGTGTGGACCCTAATGGCATCTTGGACCAGTCATGTAGCAGCTCTCAATGGTTAGATTTCTGGACATGA 735 0.4299 MEGDENIQASKGKNVESFACLEASRKKNKKIENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQVELQKLSDLVESSHDGGREDKGAKEHSIEDGGSGSGYSSWKPEAKPRFSTEGVEERVGVYSDDQNENSIIRSEKSEDKGHQLLRVDDNDQAEIPLASLEKWYSSVDPNGILDQSCSSSQWLDFWT* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0513 244 CDD homeodomain 34 89 IPR001356 GO:0003677
Pvu9g0513 244 Coils Coil 21 41 - -
Pvu9g0513 244 Pfam Homeobox associated leucine zipper 88 129 IPR003106 GO:0006355|GO:0043565
Pvu9g0513 244 PRINTS Lambda-repressor HTH signature 59 68 IPR000047 GO:0003677
Pvu9g0513 244 PRINTS Lambda-repressor HTH signature 68 84 IPR000047 GO:0003677
Pvu9g0513 244 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Pvu9g0513 244 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Pvu9g0513 244 MobiDBLite consensus disorder prediction 166 199 - -
Pvu9g0513 244 Gene3D - 15 94 - -
Pvu9g0513 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 244 IPR045224 GO:0003700
Pvu9g0513 244 Coils Coil 80 128 - -
Pvu9g0513 244 Pfam Homeodomain 34 86 IPR001356 GO:0003677
Pvu9g0513 244 MobiDBLite consensus disorder prediction 126 147 - -
Pvu9g0513 244 SMART HOX_1 31 92 IPR001356 GO:0003677
Pvu9g0513 244 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 244 - -
Pvu9g0513 244 MobiDBLite consensus disorder prediction 126 199 - -
Pvu9g0513 244 SUPERFAMILY Homeodomain-like 24 88 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0513 Pvu-Chr9 9381806 9383241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0513 15 244 Homeobox Transcription Factor Family AT2G46680 40.650 7.27e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu9g0513 Homeodomain 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0513 K09338 - gmx:100793260 425.246