Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu9g0511 | ATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACCATCACCCTTGAGGTGGAGTCAAGCGACACCATTGACAATGTCAAAACAAAGATTCAGGACAAAGAAGGGATTCCCCCGGACCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTCGCCGATTACAACATCCAAAAAGAGTCAACATTGCATCTTGTTTTAAGGCTTCGTGGTGGTATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAGTATAACCAAGATAAGATGATCTGCCGCAAGTGTTACGCACGTTTACACCCTCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGTTGAGGCCAAAGAAGAAGATCAAGTAA | 387 | 0.4729 | MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK* | 129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu9g0511 | 128 | PANTHER | UBIQUITIN-60S RIBOSOMAL PROTEIN L40 | 1 | 125 | - | - | |
| Pvu9g0511 | 128 | SUPERFAMILY | Zn-binding ribosomal proteins | 76 | 127 | IPR011332 | GO:0006412 | |
| Pvu9g0511 | 128 | SMART | Ribosomal_L40e_3 | 77 | 128 | IPR001975 | GO:0003735|GO:0005840|GO:0006412 | |
| Pvu9g0511 | 128 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Pvu9g0511 | 128 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
| Pvu9g0511 | 128 | Gene3D | - | 1 | 79 | - | - | |
| Pvu9g0511 | 128 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
| Pvu9g0511 | 128 | PANTHER | UBIQUITIN | 1 | 125 | - | - | |
| Pvu9g0511 | 128 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515 | |
| Pvu9g0511 | 128 | Gene3D | - | 80 | 128 | IPR038587 | - | |
| Pvu9g0511 | 128 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Pvu9g0511 | 128 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
| Pvu9g0511 | 128 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
| Pvu9g0511 | 128 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
| Pvu9g0511 | 128 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - | |
| Pvu9g0511 | 128 | Pfam | Ribosomal L40e family | 78 | 127 | IPR001975 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu9g0511 | Pvu-Chr9 | 9373986 | 9376107 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu9g0511 | 1 | 128 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 98.438 | 5.01e-92 | 260 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu9g0511 | K02927 | - | ppp:112276766 | 258.07 |