Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0480 ATGTCACAGCCAAGGCAAAACAAGATGATGAGTCCAAACCTTGCCAAACAAGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGATTGGCCTGGGAGACCAAGAGAGACTCTCTGAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCGGTTGTCATCACTGATAGAATCACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAAGGACCCAAATTCTGCAGCAAGGGCTTGTCTGAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGTAATCTTGCATCCCTTGGTGCCCAGAAATATGATCCATCTACAACAGGAAGACAAAAATTCAGTAGCCCTTCATGGAATACGGCACCAGTCCCGTTTCAAGGCACCTCCACTTATTATAATCAACACATACCTCACTACCCATTTCCGTATCCAGCCTACAGGTATCCTGGTTTTACTCATCCACAAGACCTGTATGAAATGGACTACAATAATGCATATGGTGGACAGCAGGTTTCCCTCCGCTGGTATCCAGCGTATTGCCAGCCCTTTTATGGCCTTGGTAGACAGATTATTCCAACAACCTATGTTAAAAAGGTCATCCCTGACATGCCATCTCAGGAGCTCACAGTTGTTGGCTTTTCAGAACCTACTTCAGCTTCTGCCTCAATTCCCAGCACTGACACTGGAGCAGTACCTGCCACAGAAGTGTTAGAATCCCCTCAAGAACAGACATCTTCAACTCCTTAA 756 0.4511 MSQPRQNKMMSPNLAKQVGDTTYTKIFVGGLAWETKRDSLKRYFDQFGEILEAVVITDRITGRSKGYGFVTFKDPNSAARACLNPYPVIDGRRANCNLASLGAQKYDPSTTGRQKFSSPSWNTAPVPFQGTSTYYNQHIPHYPFPYPAYRYPGFTHPQDLYEMDYNNAYGGQQVSLRWYPAYCQPFYGLGRQIIPTTYVKKVIPDMPSQELTVVGFSEPTSASASIPSTDTGAVPATEVLESPQEQTSSTP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0480 251 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Pvu9g0480 251 MobiDBLite consensus disorder prediction 219 251 - -
Pvu9g0480 251 PANTHER BOULE-RELATED 1 250 IPR037366 GO:0003729
Pvu9g0480 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 81 IPR000504 GO:0003723
Pvu9g0480 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Pvu9g0480 251 SMART rrm1_1 25 97 IPR000504 GO:0003723
Pvu9g0480 251 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 250 - -
Pvu9g0480 251 CDD RRM_RBM24_RBM38_like 24 99 - -
Pvu9g0480 251 Gene3D - 1 115 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0480 Pvu-Chr9 8857219 8859531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0480 8 100 C2H2 Transcription Factor Family AT2G19380 40.860 1.18e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0480 - - gmx:100788634 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0480 9 8857219 8859531 Pvu9g0480 9 8857219 8859531 ECH