Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0479 ATGGCCGTTCCTGAGAATGTTGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTGGACAACAGTGTAGTGTCATCGGACTCAGGCGAGGTTGAGCAATCGAAACCCAGAAGCGGGTCCATCAACGGCGATCAGAAGCTGAACAACGGCGTGTTCAACCACCAAGATAGAGTTCCTAGCACTATGTCAATGCCCAATAGCAATTATAACTACAAAGCCCAAATGAGTCAGATGCACGCAAATGGGGTGAGCAATGATGGATATGGGATGGATGAGGAGAATGGGGGTGACAGTTTCAAGCGTGATATGAGGGATTTGGAAGATCTCCTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCTTCACTAACCAATACTCCTGGCTACCTACCTGGACCTGGTGCAGGTGCCGGTACCGGGTTTGGTTTCCCTAATAATTTTATACTGCTCAATGGTTTTGGTAATGCTAACGGTCAAACTAACAGAAGGAGGAAGAATGGTTATAATCATGGGAAGCGAAGAGTGAATCATAAAATAGATATGGAGAAAAGAGAGGAGATGATTAAGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGTTGGCAGCACTGTTTCTTGGCTGTGGCCAGGTTGTTGATTGCCGTGTTTGCGGAGATCCTAATTCTATTCTTCGGTTTGCCTTCATCGAGTTTACAGACGAAGAAGGTGCAAGAGCTGCTTTGAGCCTGTCTGGAACTATGCTTGGATATTACCCTTTGCGAGTTCTGCCTTCAAAAACTGCTATTGCACCTGTTAACCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCCGATGTTAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCCTTTGTTGAGTTCACTCTGGCTGAGAGTGCAATTGCTGCTCTAAGCTGTAGTGGGGTGATTCTTGGTTCATTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTTCGATCGCGTGCTCCTCGTCCTTCCATGCACTGA 1131 0.4553 MAVPENVGAKIGSSSQNLDNSVVSSDSGEVEQSKPRSGSINGDQKLNNGVFNHQDRVPSTMSMPNSNYNYKAQMSQMHANGVSNDGYGMDEENGGDSFKRDMRDLEDLLSKLNPMAEEFVPPSLTNTPGYLPGPGAGAGTGFGFPNNFILLNGFGNANGQTNRRRKNGYNHGKRRVNHKIDMEKREEMIKRTVYVSDIDQLVTEEQLAALFLGCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTLAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0479 376 CDD RRM1_CID8_like 189 268 IPR034823 -
Pvu9g0479 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 266 IPR000504 GO:0003723
Pvu9g0479 376 SUPERFAMILY RNA-binding domain, RBD 163 267 IPR035979 GO:0003676
Pvu9g0479 376 MobiDBLite consensus disorder prediction 9 50 - -
Pvu9g0479 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 364 IPR000504 GO:0003723
Pvu9g0479 376 CDD RRM2_CID8_like 284 365 IPR034825 -
Pvu9g0479 376 MobiDBLite consensus disorder prediction 1 50 - -
Pvu9g0479 376 Gene3D - 275 370 IPR012677 -
Pvu9g0479 376 Gene3D - 153 268 IPR012677 -
Pvu9g0479 376 SUPERFAMILY RNA-binding domain, RBD 279 370 IPR035979 GO:0003676
Pvu9g0479 376 Pfam Ataxin-2 C-terminal region 110 123 IPR009818 -
Pvu9g0479 376 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 376 - -
Pvu9g0479 376 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 376 - -
Pvu9g0479 376 SMART rrm1_1 289 360 IPR000504 GO:0003723
Pvu9g0479 376 SMART rrm1_1 192 262 IPR000504 GO:0003723
Pvu9g0479 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 357 IPR000504 GO:0003723
Pvu9g0479 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 256 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0479 Pvu-Chr9 8845213 8850164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0479 193 359 Eukaryotic Initiation Factors Gene Family AT1G34140 24.561 2.95e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0479 - - gmx:100788102 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0479 9 8845213 8850164 Pvu9g0479 9 8845213 8850164 ECH