Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0478 ATGGCGGTTGCTGAGAATGTTGGGGCGAAAATCGGTTCTTCGAGTCAGAGTTTGGACAGCGGTGTAGTGTCTGCGGATTCGAGTGAGGTCGAGAAATCGAAGACCAGAAGCGATCAGAATCTGAACAACGGTGTGTTCACCCATCAACAGCATCCAGAGAGAGTTCCGAGTTCTATGACAGTTCCTAACGGAAATTACAGCTACAATACTCAGATGCACGCAAATGGGGTGAACAACGATGGGTATGGAATGAATGGGGTCATGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGCTGAACCCCATGGCTGAGGAGTTTGTGCCCCCATCACTAACCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATGCTGCCTAATAACTTTGGCAGTACTAATGGACAAACTAACAATAGAAGGAGGAAGAATGGCTATACTCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCTGCTCTCTTTCTCAACTGTGGCCAGTTACAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACTGATGAAGAGGGAGCAAGGGCTGCCTTGAGCTTGTCTGGTACCATGCTTGGATATTACCCGCTGAGAGTGCTGCCTTCAAAAACTGCCATCGCACCTGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAAATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGGCTGAGAGTGCAATTGCTGCTCTGAGCTGTAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCTGTCCGCCCTCGTGCTCCTCGATCCTCCATTCACTGA 1125 0.4542 MAVAENVGAKIGSSSQSLDSGVVSADSSEVEKSKTRSDQNLNNGVFTHQQHPERVPSSMTVPNGNYSYNTQMHANGVNNDGYGMNGVMSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGFLAGPNAGFGYTNNFMLPNNFGSTNGQTNNRRRKNGYTPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQLQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRSSIH* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0478 374 MobiDBLite consensus disorder prediction 9 28 - -
Pvu9g0478 374 Gene3D - 273 369 IPR012677 -
Pvu9g0478 374 Gene3D - 148 266 IPR012677 -
Pvu9g0478 374 CDD RRM1_CID8_like 185 266 IPR034823 -
Pvu9g0478 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 264 IPR000504 GO:0003723
Pvu9g0478 374 SUPERFAMILY RNA-binding domain, RBD 157 265 IPR035979 GO:0003676
Pvu9g0478 374 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 374 - -
Pvu9g0478 374 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 374 - -
Pvu9g0478 374 MobiDBLite consensus disorder prediction 1 58 - -
Pvu9g0478 374 SUPERFAMILY RNA-binding domain, RBD 277 368 IPR035979 GO:0003676
Pvu9g0478 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 254 IPR000504 GO:0003723
Pvu9g0478 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 355 IPR000504 GO:0003723
Pvu9g0478 374 MobiDBLite consensus disorder prediction 37 58 - -
Pvu9g0478 374 CDD RRM2_CID8_like 282 363 IPR034825 -
Pvu9g0478 374 Pfam Ataxin-2 C-terminal region 108 122 IPR009818 -
Pvu9g0478 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 362 IPR000504 GO:0003723
Pvu9g0478 374 SMART rrm1_1 287 358 IPR000504 GO:0003723
Pvu9g0478 374 SMART rrm1_1 188 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0478 Pvu-Chr9 8807989 8814978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0478 188 343 Eukaryotic Initiation Factors Gene Family AT1G22760 30.435 2.14e-06 47.8