Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0477 ATGAGTGGTCGCTTCTCTCGCACAATTTACGTAGGCAACCTGCCTTCTGACATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGAGTAATGGATATTGAATTGAAGATTCCTCCCCGCCCTCCATGTTATTGTTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCGATTCGAGGTAGAGATGGATACAACTTTGACGGTTGTCGGTTAAGGGTGGAGCTTGCCCATGGAGGTAGAGGACCATCATCAAGTGATCGACGTGGATATGGTGGAAGTGGTGGGGTTGGGGGTGGGGGTGGGGCTAGTGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTGGATGACACTGAGTTTAGAAATCCTTGGGCAAGAGCCTATATTCGGGTGAGAAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCCGAAGCCCCAGCAGGAGTAGAAGTCCAAAAAGGGTCAGAAGTAGATCTTTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCGATCAGCATCACCAATCAAATCTTCAAGGCCAAGATCACGCTCACGGTCTGGATCTCCTCGCCAGGTGCTGTCAGGTAGTGGATGA 783 0.4725 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRVMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGVGGGGGASGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSPKRVRSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVLSGSG* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0477 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Pvu9g0477 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Pvu9g0477 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Pvu9g0477 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 183 IPR000504 GO:0003723
Pvu9g0477 260 SMART rrm1_1 120 189 IPR000504 GO:0003723
Pvu9g0477 260 SMART rrm1_1 8 78 IPR000504 GO:0003723
Pvu9g0477 260 CDD RRM1_SF2_plant_like 8 79 - -
Pvu9g0477 260 Gene3D - 119 196 IPR012677 -
Pvu9g0477 260 MobiDBLite consensus disorder prediction 196 260 - -
Pvu9g0477 260 SUPERFAMILY RNA-binding domain, RBD 6 188 IPR035979 GO:0003676
Pvu9g0477 260 MobiDBLite consensus disorder prediction 215 229 - -
Pvu9g0477 260 Gene3D - 2 116 IPR012677 -
Pvu9g0477 260 MobiDBLite consensus disorder prediction 230 260 - -
Pvu9g0477 260 CDD RRM2_SF2_plant_like 119 194 - -
Pvu9g0477 260 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 257 - -
Pvu9g0477 260 MobiDBLite consensus disorder prediction 81 107 - -
Pvu9g0477 260 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0477 Pvu-Chr9 8791153 8797323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0477 6 203 Eukaryotic Initiation Factors Gene Family AT4G34110 22.816 1.70e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0477 K12890 - gmx:100800653 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0477 9 8791153 8797323 Pvu9g0477 9 8791153 8797323 ECH