Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0467 ATGGGGGAGACGGTGATGAGCGGAGAGAAGTCAGTGAGAGTGGAGAAGGAAGAGAGTGCGAGTGCTAGCAAGGGTGAATTGAAGGGCTTGATGAGATGGGAGAAGTTTCTGCCTAGGATGATTTTGAGGGTGTTGTTGGTTGAAGCCGATGACTCCACAAGGCAGATTATAGCTGCGCTTCTCAGAAAATGCAGCTACAAAGTGGCTGCAGTTTCTGATGGCTTGAAGGCGTGGGAATTACTCAAGGGAAGACCGGGGAGTGTTGATCTTATACTGACCGAAGTGGATTTGCCATCCATATCTGGCTATGCTCTTCTTACGTTGATTATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCTTCCAAAGATTCAATTAGCACAGTATACAAATGCATGCTGAGAGGTGCTGCCGATTATCTTGTTAAGCCAATAAGGAAAAATGAACTGAGAAATTTGTGGCAACATGTTTGGAGAAGACAATCATCAGCCACTGGCACAAATGGTCCCCAAGATGAGAGTGTTGCACAGCAGAAGATTGAAGCCACTGCTGAAAATAATGCTGCTAGCAATCGTTCAAGTGGTGATGCTGCCTGCATTCAGATAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACTAAGCCTGACTTGGAAGCTGAGAGTGGCCCTGTGGATAACACGCTAGAATTTTCTCCAGCGAAATGTGGGGAAGAATATCCAAATGGAGCAGAGACACAAGAGGTTGAAACATGCATTCGTTTAGGACGGACATTGATGATGAATGACAGTCATGCTGGAGGATTAACTATGCAGAGAAATGGTGAGGCAAGCACAACTAATGACAAGGATGCTGATCCAGAGCATTTGGGGAATGCTAGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAACTCTTCCAGGGAAGCTATTGACTTGATAGGAGCATTTCATACTCATCCCAACTGCATGGTAAAGAGTCCCACAGTTGATTGCACGGGCAAAGTTGACCTTTCTCCTCAATTAGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCCTTCAAGCGGTATACTAACAGGCAATTGCAAGTATTGACGCCTGCAGCGTTAATTAACTTCTCTGATCAACAAAGAGATCAGAGAGCAAATGGTAAGGAAAGCATCTCACACGTTGTTACTGGCTGCAACTCCGATAGTTCAACACCAGGTATGCAAAGATATATGGTGTCTCCAACTACAGTCCAATCAAAAGAGTCTGAACTTGCAACCTCACACTCTCAACAAGTGCATTCTCTCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGGACAGCCTATGGTTCTGTACATCCTTCAATGTTTCGTACACAGTCAGGTCCACCAACAATGCCAAGTCCAAGTTCAGTTGTGCTTCTTGAACCAAACTTTCAAAATGCTTTTCATCAGTCAAACATGAAAGAGAGTAGTTCGGAGCAGCTTTATGAATCTCTTGGTCCAAATGGAAACAGTTCCCAGAACCACATTGTGTACACACAGGAGCACAAAACAGAACATGCAGAGGTTCGAGGGCATATCTCTCCTACAACTGATCAAAGTGTGTCGAGTAGTTTCTGTAATGGAAACGCAAGCCATCTTAACAGCATCGGTTATGGAAGCAACTGTGGAAGTATAAGCAACGTTGATCAAGTTACCACTGTCAGGGTAGCTTCAGAGAGCAAGAATGAGGACCTCACAAACAATGCAAACTCCCATCGATCAATCCAAAGAGAAGCAGCACTAAACAAATTCCGGTTGAAAAGAAAAGAGAGATGCTATGAGAAAAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAGTTTGTTCGTCAAGTTCTTCCTGATGGTCTTGTTGCAGAACAAGATGGTAAAGAATATGATCATTCACAGATTTCTGACTTGCTGGAGAGGAGAGCATGA 2073 0.4375 MGETVMSGEKSVRVEKEESASASKGELKGLMRWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVSDGLKAWELLKGRPGSVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSKDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSATGTNGPQDESVAQQKIEATAENNAASNRSSGDAACIQINMELIEKGSDAQSSCTKPDLEAESGPVDNTLEFSPAKCGEEYPNGAETQEVETCIRLGRTLMMNDSHAGGLTMQRNGEASTTNDKDADPEHLGNASISGEAHDNHYVQINSSREAIDLIGAFHTHPNCMVKSPTVDCTGKVDLSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQVLTPAALINFSDQQRDQRANGKESISHVVTGCNSDSSTPGMQRYMVSPTTVQSKESELATSHSQQVHSLPIPVKGVRFNDLWTAYGSVHPSMFRTQSGPPTMPSPSSVVLLEPNFQNAFHQSNMKESSSEQLYESLGPNGNSSQNHIVYTQEHKTEHAEVRGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSISNVDQVTTVRVASESKNEDLTNNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVLPDGLVAEQDGKEYDHSQISDLLERRA* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0467 690 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Pvu9g0467 690 CDD psREC_PRR 44 147 - -
Pvu9g0467 690 ProSiteProfiles CCT domain profile. 620 662 IPR010402 GO:0005515
Pvu9g0467 690 MobiDBLite consensus disorder prediction 214 250 - -
Pvu9g0467 690 SMART REC_2 42 157 IPR001789 GO:0000160
Pvu9g0467 690 MobiDBLite consensus disorder prediction 406 435 - -
Pvu9g0467 690 Gene3D - 40 225 - -
Pvu9g0467 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 653 IPR045279 GO:0009736
Pvu9g0467 690 Pfam CCT motif 620 662 IPR010402 GO:0005515
Pvu9g0467 690 Pfam Response regulator receiver domain 44 155 IPR001789 GO:0000160
Pvu9g0467 690 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 7 653 - -
Pvu9g0467 690 MobiDBLite consensus disorder prediction 415 435 - -
Pvu9g0467 690 MobiDBLite consensus disorder prediction 671 690 - -
Pvu9g0467 690 SUPERFAMILY CheY-like 42 166 IPR011006 -
Pvu9g0467 690 MobiDBLite consensus disorder prediction 272 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0467 Pvu-Chr9 8704897 8709930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0467 319 663 Response Regulator Gene Family AT5G24470 30.899 1.35e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pvu9g0467 Response_reg 2.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0467 K12130 - gmx:100777119 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0467 9 8704897 8709930 Pvu9g0467 9 8704897 8709930 ECH