Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0454 ATGAAGTATTGTGAGAAAAAGAGTCTTGTTCCTCATCAAAATCAAGGTTCAAATTCTAACACTAGAGTGTTGGTTGATTTCATGAAGATGTCAAAGGATGATGATATTATTCAAGAACAATCACATAAGAAGGTAATTGATTCATCTATTTCTCACTCCAAATGTGCAGTTAAGAAGAACACCAAGGTAGAAAAAACAAAGACTTTTTCTTGCAATTATTGCAACAAAGAGTTTTCTACCTCACAAGCTTTGGGAGGACACCAAAATGCACACAAACAAGAACGTGTTGTTGCAAAACTTCGTCAAGGTTTTGATGTTAAAGGGTTAGCACAATTTCCTTATTACCCATATTATTCAGGTTTTTATAACTCTCATTCCCTTCATGGAAGATCCTTCAACGACGCACTTGGAATTCGAAGTGACTCCATGATTCACAAGCTTCCTAAGACTTCAAGATATGAGCATTCATTGTTTAAAAGGGATCATGAGAAGTTAATATTTGATGGGTTTAGAAATATGAAAAATGATTATCCAATTATAAAGAGTGGTGCAACTCTTAGTTTGAAGCCGAAAGATGACAACGATAGAATCAATATTGAAATACAGCCTCTTTTTACAAATGGTGTTGTCACTTCCTCAAGCCAAGTTAGAAAGATGACTACTCTTGCAACAACAAAAATTGGTGATCATTATGTTCCAAAAGAAACTTCCGACGAACCAGCTTGCAATCTTGATTTGTCATTGAAGCTTTAA 753 0.3466 MKYCEKKSLVPHQNQGSNSNTRVLVDFMKMSKDDDIIQEQSHKKVIDSSISHSKCAVKKNTKVEKTKTFSCNYCNKEFSTSQALGGHQNAHKQERVVAKLRQGFDVKGLAQFPYYPYYSGFYNSHSLHGRSFNDALGIRSDSMIHKLPKTSRYEHSLFKRDHEKLIFDGFRNMKNDYPIIKSGATLSLKPKDDNDRINIEIQPLFTNGVVTSSSQVRKMTTLATTKIGDHYVPKETSDEPACNLDLSLKL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0454 250 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Pvu9g0454 250 PANTHER ZINC FINGER PROTEIN JAGGED 7 250 IPR045320 GO:0003700
Pvu9g0454 250 Gene3D Classic Zinc Finger 30 107 - -
Pvu9g0454 250 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 7 250 - -
Pvu9g0454 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Pvu9g0454 250 Pfam C2H2-type zinc finger 69 93 - -
Pvu9g0454 250 SUPERFAMILY beta-beta-alpha zinc fingers 66 96 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0454 Pvu-Chr9 8530288 8531040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0454 37 168 C2H2 Transcription Factor Family AT5G25160 35.036 1.27e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu9g0454 zf-C2H2_6 4.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0454 - - pvu:PHAVU_009G043700g 505.753