Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0446 ATGGAGAAGGATCTCGTGGAACTGTATGACGCCGCGAAGAAGGCAGCTGATGCGGTCCTCTCCGGAGACGCCGAGCATGAGGAGAGCCGATGCATTGATGCCCTCGAACAGCTTAAGAAATTTCCCGTTAATTACAAGATTCTTGTTAACACTCAGGTGGGGAAACATCTTAAAGTTCTCACAAAGCACCCAAGGCAGACAATTCGGGCTTTTGCTGTTGACCTAATTGAGATATGGAAAGGAATAATTATCAAGGAAACAAGCAAAAATAAAAACGGGGGTATTGATAGTAAGGTTGAATCAGCTAACGGGGAGAGATCTAAATCTGGGAAAATGCAGAAGAGTCCTTCAGTGAAGATTGAAAAAGGTGAAACTGTTAAGGCTGAGAGACATGATAGGAATGGAACATCAAAGTCAGGCGCAGAAAGTATGAAAAAGGTACAAAATGATGTCAAGAATGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGTCAGCCAAGGAGGTAAAGCCAGTTTCTGGAGCAAAGAAAATATCGTCCAGTTCTGCAACTCCCCCAAAGCTGACAACTATGATCAAATCTAATGATGCAACGCGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTGGCCAAGGTCTCTGGAGAGGCTGATGAAGATCTTGTAGCGATAGTCAATGATACTGATCCTATTCGAGTTGCTGTGACAGTGGAGTCTGTATTATTTGAAAAATGGGGTCCTTCCAATGGAGCGCAGAAGGTCAAGTACAGGTCCTTAATGTTTAACCTTAAGGATTCAAATAACCCTGATTTTCGGAGAAAAGTTCTGCTTGGTGTTGTTGAGCCTGAGCAACTGATCAACATGAGCTCAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAAAATCAGAAAATCACTGAGAAAGCTTTGTTTGAATGTGAGCGTGGAGGTCAACCAAAAGCTACAACCGATCAATTTAAGTGCGGGCGATGCGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACCTGTTGTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1107 0.4363 MEKDLVELYDAAKKAADAVLSGDAEHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQTIRAFAVDLIEIWKGIIIKETSKNKNGGIDSKVESANGERSKSGKMQKSPSVKIEKGETVKAERHDRNGTSKSGAESMKKVQNDVKNEKTDRAASVKVEKSAKEVKPVSGAKKISSSSATPPKLTTMIKSNDATRDKIRELLHEALAKVSGEADEDLVAIVNDTDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMSSAEMASEQRKQENQKITEKALFECERGGQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCCVCNNRWKFC* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0446 368 ProSiteProfiles TFIIS central domain profile. 200 323 IPR003618 GO:0006351
Pvu9g0446 368 ProSitePatterns Zinc finger TFIIS-type signature. 330 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pvu9g0446 368 CDD TFIIS_I 23 83 - -
Pvu9g0446 368 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 368 - -
Pvu9g0446 368 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 95 IPR035441 -
Pvu9g0446 368 MobiDBLite consensus disorder prediction 115 173 - -
Pvu9g0446 368 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Pvu9g0446 368 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 368 - -
Pvu9g0446 368 Gene3D - 297 368 - -
Pvu9g0446 368 SMART mid_6 198 306 IPR003618 GO:0006351
Pvu9g0446 368 PIRSF TFIIS 2 368 IPR035100 -
Pvu9g0446 368 SMART TFS2_5 8 85 IPR003617 GO:0005634
Pvu9g0446 368 CDD Zn-ribbon_TFIIS 321 367 - -
Pvu9g0446 368 TIGRFAM TFSII: transcription elongation factor S-II 12 368 IPR006289 GO:0003676|GO:0005634|GO:0006368
Pvu9g0446 368 MobiDBLite consensus disorder prediction 177 191 - -
Pvu9g0446 368 MobiDBLite consensus disorder prediction 90 191 - -
Pvu9g0446 368 SUPERFAMILY Elongation factor TFIIS domain 2 185 298 IPR036575 GO:0006351
Pvu9g0446 368 ProSiteProfiles Zinc finger TFIIS-type profile. 326 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pvu9g0446 368 Pfam Transcription factor S-II (TFIIS), central domain 197 314 IPR003618 GO:0006351
Pvu9g0446 368 SUPERFAMILY Zinc beta-ribbon 307 366 - -
Pvu9g0446 368 SMART Cys4_2 328 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pvu9g0446 368 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 93 IPR035441 -
Pvu9g0446 368 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Pvu9g0446 368 Pfam Transcription factor S-II (TFIIS) 328 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pvu9g0446 368 Gene3D - 176 296 IPR036575 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0446 Pvu-Chr9 8402150 8406164 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu9g0446 TFIIS_M 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0446 K03145 - gmx:100811982 654.825