Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0426 ATGGAGACTCTGAAAGCAGCTATTCCAGAAAGCCTGAAGCGAGCGATAGCGGATAGCAATGTCGATGATCTTCAAAGCACTTGTTCTTCTCTTCACCGCTTCTTTCTCCACTTCGATCCATTTCACCAGATTATCACTCAACTGGCGGATCCAAAGTATGGTCTGTGCGGTAAGAGTGAGGAAGATGCCTTGAAATCCAAGCAGCTTGGGAATGAATGCTTCTCCAACGCAGATTATGCCAAGGCCTTGGACTGCTATACCCAGGCATTGCGCAAGGCTCCATTAGATACTGGTGATAGGAAAAGTAATCTTGTTGCAACATTATATATCAATCGGGCTACTGTATTGCATAAAATGAGTCTTTTAGTAGAATGCTTGCGAGATTGCACTCGAGCTCTTAAAATTTGTCCAAGCTACGCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATTGGGAAATTACAGAAATGCAATTTGCGACCTAAATGTGGCCAAGATTGTGGAACCTTCATTAGGTGGGAAGAGACAAATAGAAGTTGAACTGAAAATTCTTTTAGACCAATGCAAAAGCACAAGTGCGGCAGTACAGATACAACATAAGGATAACAGCTGCAATACTGTGGGTGAGATGCCTCAAATGAAGCTACAGTGTGTCTCCATGCCTGATAAAGGAAGAGGCATGGTCTCATCATGTGTCATTTCACCAGGTTCTTTGGTTCATTCCGAAGAACCTTATGCTATGATAATTTTAAAGCAATGTCGGGAAACCCATTGCCATTATTGTTTGAATGATCTACCTGCTGATAGAGTTCCTTGTATATCATGTTCAATACCATTGTATTGCTCCCACCAATGCCAGATACGAGCAGGTGGGCAAATGTTCAGGATTTATCCAGAAAATAATGACACTTTTAAAAAAATGCCCAGTGATCTTGGAGAATATGCTTCTGAAGTTATCCAAAGCGATGATTCTGAACAAGAAATTGAGGATATTACTGAACATAAACATGAATGTGGAGGTGTACATTGGCCTGTGGTACTGCCATCTGAGATTGTTTTGACTGGCCGAATACTAGCAGGGTTTTTGCTGAATAGCACATCTGAAAATATTGTAAACTTTGTGGAAAGACTGGAGCTTTCTCATTGTTACAAACACATGTCATCCGAAAGCAAATTGGATTCACATATATATGCCACTGTATTGTTATATTGTCTTCAGCACTCTTGTGAAACTATGTTTTCCATAGACGGAGTCTCCATATCGCAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACCATTGTTCGTTTAAAATCAATAGATGCTCATGGAGGTCATTTTGGAGAATTTCCATTTCAATACGGTGCACATTCAACCAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCCATCTATAAAGCTGGCAGTTTATTTAACCATTCTTGCCAACCGAATGTTCATGCATATTTTCTTTCACGCACTCTTTACCTACGAACCACACATGGTGTTGCAGCTGGTTGTCAGCTAGAACTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAACTTTCTCAAAGACGAATATGCATTTCATTGTCAGTGTATTGGTTGTTCAGAAGTTAATGTATCTGACGTAGTCCTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGCGCAGTGTTAGAAAGCAGAGTACTTGACTGTGAACAGCAGAAAATCAAGCACTTCACTATTACTGACCGTGTTGACAAGAATGATGACATTAGTGTATGTCTTAATGTCTTCAAACAAAACGGGGCCTATATTCATGGTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTAGAGTCTTCACAAGCAGCAGTCAGTGAAGCTTTAATATGTATCAAAAGGTTGCAGGATGCAATATTGTTGAAAGAAATTTCAAGTATTACTATTTCTGATGCTTTGATATCTCTTCAATCGCTAAGATTAAATTTGCATGCTTACAACAAGCTTATTGCAGAGGCAGAAGACAGCATTGCTCAGGCTTTCTGTTTAGTGGGAGAATTACAATTATCTGTTGATCATTGCAAAGCTTCTATCCAGATTCTGGAAAAGCTATATGATACTGATGATATTGTTATTGCTTACGAACTGGTGAAGCTTTCTTCCATCCTACTTTCCTTGGATGATTCTACTGCTGCGGAAAGCATAAATCGAATTGATGATATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGTGTTCCCTGATCTTCAATATCTCAGGAAAGAAATTGAGAAATTTTCAGTGAAGGCCATCCAATAA 2355 0.3962 METLKAAIPESLKRAIADSNVDDLQSTCSSLHRFFLHFDPFHQIITQLADPKYGLCGKSEEDALKSKQLGNECFSNADYAKALDCYTQALRKAPLDTGDRKSNLVATLYINRATVLHKMSLLVECLRDCTRALKICPSYAKAWYRRGKANASLGNYRNAICDLNVAKIVEPSLGGKRQIEVELKILLDQCKSTSAAVQIQHKDNSCNTVGEMPQMKLQCVSMPDKGRGMVSSCVISPGSLVHSEEPYAMIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIRAGGQMFRIYPENNDTFKKMPSDLGEYASEVIQSDDSEQEIEDITEHKHECGGVHWPVVLPSEIVLTGRILAGFLLNSTSENIVNFVERLELSHCYKHMSSESKLDSHIYATVLLYCLQHSCETMFSIDGVSISQVVIIISQIKVNCMTIVRLKSIDAHGGHFGEFPFQYGAHSTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLYLRTTHGVAAGCQLELSYGPQVGLWDCKDRLNFLKDEYAFHCQCIGCSEVNVSDVVLNAFHCVNPNCSGAVLESRVLDCEQQKIKHFTITDRVDKNDDISVCLNVFKQNGAYIHGQPGYCLKCGSYCDLESSQAAVSEALICIKRLQDAILLKEISSITISDALISLQSLRLNLHAYNKLIAEAEDSIAQAFCLVGELQLSVDHCKASIQILEKLYDTDDIVIAYELVKLSSILLSLDDSTAAESINRIDDIFSRYYGLHADLVFPDLQYLRKEIEKFSVKAIQ* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0426 784 SUPERFAMILY SET domain 219 544 IPR046341 -
Pvu9g0426 784 ProSiteProfiles SET domain profile. 215 519 IPR001214 GO:0005515
Pvu9g0426 784 Coils Coil 667 687 - -
Pvu9g0426 784 Pfam SET domain 226 519 IPR001214 GO:0005515
Pvu9g0426 784 Gene3D Tetratricopeptide repeat domain 524 779 IPR011990 GO:0005515
Pvu9g0426 784 Gene3D SET domain 426 518 IPR046341 -
Pvu9g0426 784 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 774 - -
Pvu9g0426 784 Gene3D Tetratricopeptide repeat domain 42 199 IPR011990 GO:0005515
Pvu9g0426 784 SUPERFAMILY TPR-like 60 172 IPR011990 GO:0005515
Pvu9g0426 784 SMART tpr_5 106 139 IPR019734 GO:0005515
Pvu9g0426 784 SMART tpr_5 682 715 IPR019734 GO:0005515
Pvu9g0426 784 SMART tpr_5 63 96 IPR019734 GO:0005515
Pvu9g0426 784 SMART tpr_5 140 173 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu9g0426 SET 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0426 K24634 - gmx:100783548 1358.2