Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0396 ATGGGTTACCTCTCCTGCAATGCCCAATCAGCAATCGCCACCTGCGACCCTCACTTCAAAAAGCACAAACCCCTCGCTGCAAAACCAATCCGCCACTTTCACTACGCCGAAATCGCCGCCGCTACTTCTGGTTTCTCTGCCGAGAGCTTCCTAGGCAGAGGCAGCCACGGCAGAGTGTACAAAGCTACTCTCGACGGCGGAAAGCTCCTTGCCGCCGTCAAAACGACGAAACTGGTCTCTGCCTCGAAGAACCACTCCACTAAATGCACCGGCTGCGGGAACTGCACCAGCCCCACGGAAAACGAGATCGAGATCCTTTCTCAAGTTCCGAGCCCCCGCGTGGTGAACCTCATCGGCTTCAGCACCGACCTAAACGGCAACAAATTAATCGTGGTTGAATACATGCCCAACGGTTCGCTCCACGATCTACTACATTCCGTTAAAAAACCGCCCGGTTGGAACCGGAGGGTCCGGTTCGCGGTTCAGGTTGCGAAAGCGGTTCGCGAATTGCACTCTTCCAACCCTCCCGTTATTCACCGCGACGTTAAGTCTTCCAATGTTTTAATTGACGAGAAATGGAACGCCAGGCTCGGTGACTTTGGCCTTGCCTTAAGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACGCCGCCCGCGGGGACGTTAGGGTACCTCGACCCGTGCTATCTTGCGCCAGAGGATCTCAGCGCCAAGAGCGACGTCTTCAGTTTCGGGATCTTGCTGCTGGAGATCATCAGCGGCCGGAACGCCATCGATGTCAATTACAGTCCTCCCTCGGTGGTGGACTGGGCGGTGCCGCTGATCAAGCTCGGTGACTTCGCCAGAATCTGCGACCGCCGGATCGGCCCGCCGACGGACCCCGCCGTGGTGCGGCAGCTCGCGGTGCAGGCTGCCAGATGCGTGAGGTCGACAGCTGAGAAGCGGCCGTCCATGGCGGAGGTGGTGGAGTGTCTGAATCTAGTAAGAAAGAGGGTTCGTGCGTCGCCGATGTGGCTGTCTTTGCGGCGGCGAGTGGCGCGTATAGAGAGCACGATGCCGGTGGTGGCGTGGGAGGAGTGTGATGATAATAGTATTAATGATTGTGACAGCAGTGAGAAATTTGTGAGAATGGTGAAAGGTGGGAGTGGGAGCAGGAGCAGGAAGAAGGGGAAAGTATCTAGTGTGTGGGGTGTAGGGTATGGGAGTGAGGCCTCCAATAATAATAAAGTCACAAGGTCAAAGTCCATTGGTTCTGGTTCTGGTTTGGTGAGAGGGAGTTGGGTTAAAATGCAGCCACACCAAACCGAGCACGGGTTTGGGAGAAGGAAGGTGAGGTTAAAGAAGTCAAAGTCTATGGGGGTTTTGCAAGGGTCTGCACTTTCACATTACAGTGAGAATAATAACAAAAGGAGTTACAACAATAATAATGATGATGATGTATTAGTAATAGGGTCGGCAATGGCCAATTTGGTTGTTACAGATAAGTTAGAAAAGAAAATGGTGGAAAAAGCGTTAGTGAAATTGCATGATGAGGGTGGGAGTGTGAGGATAGACAATGAAGGAATTATTTGA 1572 0.5337 MGYLSCNAQSAIATCDPHFKKHKPLAAKPIRHFHYAEIAAATSGFSAESFLGRGSHGRVYKATLDGGKLLAAVKTTKLVSASKNHSTKCTGCGNCTSPTENEIEILSQVPSPRVVNLIGFSTDLNGNKLIVVEYMPNGSLHDLLHSVKKPPGWNRRVRFAVQVAKAVRELHSSNPPVIHRDVKSSNVLIDEKWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSVVDWAVPLIKLGDFARICDRRIGPPTDPAVVRQLAVQAARCVRSTAEKRPSMAEVVECLNLVRKRVRASPMWLSLRRRVARIESTMPVVAWEECDDNSINDCDSSEKFVRMVKGGSGSRSRKKGKVSSVWGVGYGSEASNNNKVTRSKSIGSGSGLVRGSWVKMQPHQTEHGFGRRKVRLKKSKSMGVLQGSALSHYSENNNKRSYNNNNDDDVLVIGSAMANLVVTDKLEKKMVEKALVKLHDEGGSVRIDNEGII* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0396 523 SMART serkin_6 45 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g0396 523 PANTHER - 1 492 - -
Pvu9g0396 523 Gene3D Transferase(Phosphotransferase) domain 1 135 338 - -
Pvu9g0396 523 SUPERFAMILY Protein kinase-like (PK-like) 27 325 IPR011009 -
Pvu9g0396 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Pvu9g0396 523 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Pvu9g0396 523 ProSiteProfiles Protein kinase domain profile. 45 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g0396 523 Pfam Protein tyrosine and serine/threonine kinase 48 325 IPR001245 GO:0004672|GO:0006468
Pvu9g0396 523 PANTHER OS01G0750732 PROTEIN 1 492 - -
Pvu9g0396 523 Gene3D Phosphorylase Kinase; domain 1 7 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0396 Pvu-Chr9 7833136 7834707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0396 31 336 Receptor kinase-like Gene Family AT3G59420 40.193 1.93e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pvu9g0396 PK_Tyr_Ser-Thr 4.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0396 - - gmx:100799382 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1810 8 45965205 45965944 Pvu9g0396 9 7833136 7834707 PCT
Pvu8g1858 8 47351028 47352275 Pvu9g0396 9 7833136 7834707 PCT