Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu9g0395 | ATGGAATTTCACCACCACCAAGACCAGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAAATGGGATTCTCGGTGGCGGCGCCGGGTTACGACTCTTTCGGAAACGCGGCCGCCAGGTCTAAAATTACCTCCGCTGAGGGACTTCCGGCCACCGTCAACTCTGGTCGGAAAGGCGGCTCCACGGGGACGGTCAGATACAGAGAATGTCAGAAGAATCATGCCGTCAGCATCGGCGGCCACGCCGTCGATGGATGCTGCGAGTTCTTGGCCGCCGGAGAGGAAGGCACGTTGGAGGCCGTAATTTGCGCCGCCTGTAACTGCCACCGCAATTTTCACCGCAAGGAGATCGACGGGGAAATCAGCCCTTACCAGCTGCGCTCGCAGCCGCAGCCGCAACCGCTGCATCCTCAGTATCACCACCAATTCTCCCCTTACTACCACCGCGGGCCACCACCTTCTTCCGCGGGATACCTCCACCACCACCACCTTTTAACCCCTCCTGTGTCGCAGCATCGGCCTTTGGCGCTACCACCGCTGGCTTCGGGAGGAGTGTTCAGTAGAGAAGAGGAGGACATGTCAAACCCCAGCTCGAGCGGCGGCGGTTTTGGTGGCGGTAGCGGCAGTGGAACGAAGAAGAGGTTTAGGACAAAATTCACGCAAGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAAGTTAGGATGGAGAATTCAGAAGCATGACGAAGCTGCTGTGGAACAATTCTGCGCTGAAACTTGTGTGAAGAGACATGTGCTCAAGGTCTGGATGCACAATAACAAACACACTCTCGCTAATTCTGAGCAACGTTCAGCTGGGAATGGATCGAATCACTTGAACAGCTCCACCATAATTGCGAATTCAGAACTCTCTCCCAAGGGAGATTAA | 918 | 0.5566 | MEFHHHQDQEEEEEEEEEEEEEEEMGFSVAAPGYDSFGNAAARSKITSAEGLPATVNSGRKGGSTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEISPYQLRSQPQPQPLHPQYHHQFSPYYHRGPPPSSAGYLHHHHLLTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGFGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSSTIIANSELSPKGD* | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu9g0395 | 305 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 38 | 275 | - | - | |
| Pvu9g0395 | 305 | Gene3D | - | 201 | 278 | - | - | |
| Pvu9g0395 | 305 | MobiDBLite | consensus disorder prediction | 194 | 208 | - | - | |
| Pvu9g0395 | 305 | Pfam | ZF-HD protein dimerisation region | 68 | 120 | IPR006456 | - | |
| Pvu9g0395 | 305 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Pvu9g0395 | 305 | SUPERFAMILY | Homeodomain-like | 201 | 273 | IPR009057 | - | |
| Pvu9g0395 | 305 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
| Pvu9g0395 | 305 | MobiDBLite | consensus disorder prediction | 275 | 299 | - | - | |
| Pvu9g0395 | 305 | MobiDBLite | consensus disorder prediction | 172 | 216 | - | - | |
| Pvu9g0395 | 305 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 70 | 119 | IPR006456 | - | |
| Pvu9g0395 | 305 | MobiDBLite | consensus disorder prediction | 275 | 305 | - | - | |
| Pvu9g0395 | 305 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 69 | 120 | IPR006456 | - | |
| Pvu9g0395 | 305 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 38 | 275 | - | - | |
| Pvu9g0395 | 305 | Coils | Coil | 3 | 26 | - | - | |
| Pvu9g0395 | 305 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 215 | 271 | IPR006455 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu9g0395 | Pvu-Chr9 | 7820323 | 7822453 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu9g0395 | 19 | 274 | ZF-HD Transcription Factor Family | AT4G24660 | 50.000 | 2.44e-68 | 211 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | zf-HD | Pvu9g0395 | ZF-HD_dimer | 2.9e-28 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu9g0395 | - | - | gmx:100820567 | 482.256 |
Event-related genes