Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0387 ATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACTGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGACGTTGGTCTCATAGTTTTCTCATCTACCGGGAAGCTCTTTGAGTATAGCAGTTCCAGTATGAATGACATAATTACAAAGTATAATACGCACTCGCCTGGCATCAATAAATTGGATAGGCCATCACTAGAACTGCAGCTAGAGGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAACTAAGTTGGATGAAAGGCGATGATCTTCAAGGACTAGGCCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAAGTGGACTCGATCGTGTCATTCAGATAAAGGAAAAGCAGATGATGAGCCAGATTTCTGAACTTCAGAAAAAGGGAATCCTGTTGGAAGAAGAGAACAGGCATTTAAAGAGAAAGCTAGTGGAGACGGAGATGGAGGCTATGCTGCGTAAAGCAAAAATGCCTTTTATGATGGACTCGAACATGGGAATGCAAGAAGAAGGTGTTTTATTAGAGTCTACAAACAACGTTAGCAGTAGCATCAGTGACCCTCATGTTGAAGATGGTTCCTCGGACACATCTCTCAAGTTAGGGCTACCCTTCTCTAAGTGA 702 0.4274 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFEYSSSSMNDIITKYNTHSPGINKLDRPSLELQLEASNSAKLSKEIADRTQELSWMKGDDLQGLGLNELQQLEKTLESGLDRVIQIKEKQMMSQISELQKKGILLEEENRHLKRKLVETEMEAMLRKAKMPFMMDSNMGMQEEGVLLESTNNVSSSISDPHVEDGSSDTSLKLGLPFSK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0387 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu9g0387 233 CDD MADS_MEF2_like 12 73 IPR033896 GO:0000977|GO:0045944
Pvu9g0387 233 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 227 - -
Pvu9g0387 233 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu9g0387 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 227 - -
Pvu9g0387 233 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Pvu9g0387 233 Coils Coil 123 143 - -
Pvu9g0387 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu9g0387 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu9g0387 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu9g0387 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu9g0387 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu9g0387 233 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu9g0387 233 Coils Coil 149 169 - -
Pvu9g0387 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu9g0387 233 MobiDBLite consensus disorder prediction 206 233 - -
Pvu9g0387 233 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0387 Pvu-Chr9 7765144 7768533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0387 1 231 MADS-box Gene Family AT2G22540 55.649 3.10e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu9g0387 K-box 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0387 - - gmx:100776749 369.777