Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0366 ATGTACGACCCCATGAACCAGATCGTCCCGGCCGAAGACAACGACGCCGACGCCTCCGATCAACACATCCATTACAGCTCCCACACCATAGAAGACGTTGGCGCCGATGTCGAAGACGTTTCCGCCGTCTCCCTCTACGTTTCACCCCCTGAAATCTCTGTCCAGGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTCTATGTCTTCGATGCCGTTACACCTGATAAGGTCCAAGCAGTATTGTTGCTGTTGGGAGGAAGTGAACTTACTCCGGGCTCGCAATGTGCGGTGGAACTATCCCCTCAAAATCATACGGGTTCAGTAGAATTTCCTGCAAGATGCAGTCTACCACAGCGAGAGGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTTCAGATCAAGAGTCGGGACAGGAGGCTGTTCAATCTGAAAACTCTTGTACACATTGTGGAACAAGTTCAAAATCCACTCCAATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAAGAACACTCTCTTGTTCCACTTGAGCAGGTTGATGTGGGTAGTAATAATGACTTGGACTGTCGGAGTGTTATCCCGGCACAACATGACAATCATGTTAATGATATCAAAGCTTTGGTATCTGATCGTTGA 831 0.4777 MYDPMNQIVPAEDNDADASDQHIHYSSHTIEDVGADVEDVSAVSLYVSPPEISVQDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTPGSQCAVELSPQNHTGSVEFPARCSLPQREASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSWGSDQESGQEAVQSENSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLVPLEQVDVGSNNDLDCRSVIPAQHDNHVNDIKALVSDR* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0366 276 CDD ZnF_GATA 188 234 IPR000679 GO:0006355|GO:0043565
Pvu9g0366 276 MobiDBLite consensus disorder prediction 162 202 - -
Pvu9g0366 276 ProSiteProfiles GATA-type zinc finger domain profile. 183 242 IPR000679 GO:0006355|GO:0043565
Pvu9g0366 276 PANTHER GATA TRANSCRIPTION FACTOR 28 12 255 IPR045280 GO:0006355
Pvu9g0366 276 SMART tify_2 53 88 IPR010399 -
Pvu9g0366 276 ProSitePatterns GATA-type zinc finger domain. 189 216 IPR000679 GO:0006355|GO:0043565
Pvu9g0366 276 Gene3D - 180 237 IPR013088 GO:0006355|GO:0008270
Pvu9g0366 276 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 235 - -
Pvu9g0366 276 MobiDBLite consensus disorder prediction 154 207 - -
Pvu9g0366 276 PANTHER GATA TRANSCRIPTION FACTOR 25 12 255 - -
Pvu9g0366 276 Pfam GATA zinc finger 189 225 IPR000679 GO:0006355|GO:0043565
Pvu9g0366 276 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Pvu9g0366 276 SMART GATA_3 183 236 IPR000679 GO:0006355|GO:0043565
Pvu9g0366 276 Pfam CCT motif 121 163 IPR010402 GO:0005515
Pvu9g0366 276 Pfam tify domain 57 87 IPR010399 -
Pvu9g0366 276 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0366 Pvu-Chr9 7520971 7525251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0366 45 244 Tify Gene Family AT4G24470 66.667 7.67e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu9g0366 CCT 1.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0366 - - pvu:PHAVU_009G035400g 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1895 8 48338884 48343489 Pvu9g0366 9 7520971 7525251 PCT