Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0365 ATGGCGTCCGTCAATCCGCAGCCTCTGCACTTCCAGGACCCTGCGATACCCGTCCATGACGACGATGACAGTGATGGTGCTGATGACGATGTTATGGATGACTTGGAGGATGCGCATATTGCCACTCATGAAGCGCTGCCTGCTATGCCCTCCAGGACTAGCGAGCTTACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCAGTCACTCCTCAGAAGGTTCAAGCCGTCTTGCTGCTTTTGGGAGGACGTGATGTGCACGCAGGTGTGCCTGTAGTTGAACTACCATTTGATCAAAGTAACAGGGGTATGGGTGATAATCCAAAGCGTTCGAACCTTTCACGAAGAATAGCATCCTTGGTCAGATTCCGCGAGAAACGAAAGGAGAGATGTTTTGACAAGAAAATTAGGTATACCGTGAGAAAAGAGGTGGCACAGAGAATGCATAGGAAGAATGGGCAGTTTGCATCCTTGAAAGAAAGTCCAGGTTCATCTAATTGGGATGCACGGAGTTCTGCTCAAGATGGCACTTTTCATTCTGAATCTGTACGTAGATGTCACCATTGTGGTGTCACTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGCAATGCATGCGGCCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTCAGCAAAGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGACATTCCTATTGATGTCAAGCCGCCTACTTCTGTTATTGAAGGGGAATTGCCCGGAATCCATGATGAGCAAGGTAGTTCTGAAGATCCGTCCAAGTCCAACACGGCTGATGGTTCCAGTGGTCATGCAGTAAACCCTAGTGATGAGGAATTGCCTGAAACTGCAGACCACTTTAGGAATGCTCTGCCACCAGGACTCGGTGATTCTTCAACAAATGACACAGAACAGGAACCTCTGGTCGAACTTTCTAATCCTTCAGATACAGATATAGACATTCCAGGAAACTTTGATTAG 1017 0.4769 MASVNPQPLHFQDPAIPVHDDDDSDGADDDVMDDLEDAHIATHEALPAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVHAGVPVVELPFDQSNRGMGDNPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDARSSAQDGTFHSESVRRCHHCGVTENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDIPIDVKPPTSVIEGELPGIHDEQGSSEDPSKSNTADGSSGHAVNPSDEELPETADHFRNALPPGLGDSSTNDTEQEPLVELSNPSDTDIDIPGNFD* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0365 338 MobiDBLite consensus disorder prediction 158 180 - -
Pvu9g0365 338 MobiDBLite consensus disorder prediction 241 338 - -
Pvu9g0365 338 ProSitePatterns GATA-type zinc finger domain. 187 214 IPR000679 GO:0006355|GO:0043565
Pvu9g0365 338 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 338 - -
Pvu9g0365 338 PANTHER GATA TRANSCRIPTION FACTOR 28 1 338 IPR045280 GO:0006355
Pvu9g0365 338 Pfam CCT motif 117 158 IPR010402 GO:0005515
Pvu9g0365 338 Gene3D - 181 234 IPR013088 GO:0006355|GO:0008270
Pvu9g0365 338 ProSiteProfiles GATA-type zinc finger domain profile. 181 240 IPR000679 GO:0006355|GO:0043565
Pvu9g0365 338 Pfam GATA zinc finger 187 223 IPR000679 GO:0006355|GO:0043565
Pvu9g0365 338 ProSiteProfiles CCT domain profile. 117 159 IPR010402 GO:0005515
Pvu9g0365 338 MobiDBLite consensus disorder prediction 153 183 - -
Pvu9g0365 338 SMART GATA_3 181 234 IPR000679 GO:0006355|GO:0043565
Pvu9g0365 338 MobiDBLite consensus disorder prediction 306 324 - -
Pvu9g0365 338 ProSiteProfiles Tify domain profile. 49 84 IPR010399 -
Pvu9g0365 338 Pfam tify domain 51 83 IPR010399 -
Pvu9g0365 338 SMART tify_2 49 84 IPR010399 -
Pvu9g0365 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 231 - -
Pvu9g0365 338 MobiDBLite consensus disorder prediction 1 29 - -
Pvu9g0365 338 CDD ZnF_GATA 186 230 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0365 Pvu-Chr9 7510054 7517246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0365 8 229 Tify Gene Family AT1G51600 47.581 4.65e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu9g0365 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0365 - - vun:114164157 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0365 9 7510054 7517246 Pvu9g0365 9 7510054 7517246 ECH