Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0351 ATGACCACTCTCCCACTCAAACCCCACACCACTCTCCACCATGACCTTTTTCTTTTCTATTTTTATTTTCTTCTCCTCACACACTTTCCGCCGGCGGCCGCCGCGCAGCTTCCCAACGCGCTCACGCCACCGCCGCCGGACCGGCTATCGAGGCTGAAGTTCGACAAGTCCATGGCCATCGTTCTGGTGATCCTGGTGGCGGTGTTCTTCTTGCTTGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCAGAGCGAAGGATGCGAGGGAGGTTCGACCTCTCCATCTCGATCGGGCGTCGGAACCGCGGTCTGGACCGCGAAATCATCGAGACCTTCCCCACCTTCGTCTACTCCACCGTGAAGAGCCTGAAGATAGGACTGGCCACGCTAGAATGCGCCGTGTGCCTGAGCGAGTTCGAGGAGGAGGAAACGCTGCGTTTGATACCCAAGTGCAGCCATGTGTTCCACCCCGAGTGCGTCGACGCGTGGCTGGCCAATCACTCCACCTGTCCCGTCTGTCGCGCCAACCTTCTCCCCAAACCCGACGACCCATCCTTTGTTTCCATCCAAATCCCGGATCCGGTTCAACCCGTTTTAAACTCCCCGGTCCAACCCGAATCCACGGATTCTCCGAAGCCGAATGATTTGATTAATCACAACCGTTCACCGTGGTCAAGGTCAACGGGTTTCAGCCTCGCCAGTTTGATTCCGCGATCTCACTCGACGGGTCACTCCCTGGTTCAACCGAGAGAGAATTGCGAGCGCTTCACTCTGCGTTTGCCCGAGGAAGTGCGGAACCAGCTCATGACTTCCACCACGCTGAGTCGCACCACGAGCTGCGGCTTGAACCTGGGTCTCACGCCCGAGAATAGTGGGAGGAGGGGTTACAGGACCAGAAGTGTTGGTAGCAGTCTTAGTGCTCACGTGAACAGAGGCGTGGGCAGCACCGGCAGCAGCCCTCACGTGAGGGGACACGACAGACGTTGGTTTTTTCAGAGCCCTCCCTCAAAGGACTCCATTAAGGAAGATGTCGGCGAACGTTCCTCGGATCGCCTTTTCTCGGAGGCCACAAAGGATAGTCATAATTAA 1089 0.5739 MTTLPLKPHTTLHHDLFLFYFYFLLLTHFPPAAAAQLPNALTPPPPDRLSRLKFDKSMAIVLVILVAVFFLLGFLSVYTRQCAERRMRGRFDLSISIGRRNRGLDREIIETFPTFVYSTVKSLKIGLATLECAVCLSEFEEEETLRLIPKCSHVFHPECVDAWLANHSTCPVCRANLLPKPDDPSFVSIQIPDPVQPVLNSPVQPESTDSPKPNDLINHNRSPWSRSTGFSLASLIPRSHSTGHSLVQPRENCERFTLRLPEEVRNQLMTSTTLSRTTSCGLNLGLTPENSGRRGYRTRSVGSSLSAHVNRGVGSTGSSPHVRGHDRRWFFQSPPSKDSIKEDVGERSSDRLFSEATKDSHN* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0351 362 MobiDBLite consensus disorder prediction 197 223 - -
Pvu9g0351 362 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Pvu9g0351 362 CDD RING-H2_EL5_like 131 174 - -
Pvu9g0351 362 PANTHER RING-H2 FINGER PROTEIN ATL11 16 286 - -
Pvu9g0351 362 SMART ring_2 132 173 IPR001841 -
Pvu9g0351 362 Pfam Ring finger domain 131 174 IPR001841 -
Pvu9g0351 362 PANTHER RING FINGER DOMAIN-CONTAINING 16 286 - -
Pvu9g0351 362 SUPERFAMILY RING/U-box 126 182 - -
Pvu9g0351 362 MobiDBLite consensus disorder prediction 285 362 - -
Pvu9g0351 362 MobiDBLite consensus disorder prediction 339 362 - -
Pvu9g0351 362 MobiDBLite consensus disorder prediction 293 317 - -
Pvu9g0351 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0351 Pvu-Chr9 7335214 7336979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0351 22 295 Rapid Response to Elicitors AT3G05200 40.667 1.72e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0351 K10664 - gmx:100805815 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0351 9 7335214 7336979 Pvu9g0351 9 7335214 7336979 ECH
Pvu8g1843 8 47011665 47013521 Pvu9g0351 9 7335214 7336979 PCT