Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0350 ATGGCACTGGAAGCTGTGGTATTTCCGCCGTACGCTTGCAAGGATTATTTTTACTCCTTGGTAGGAGCAGCACCCAACTTCGGTTTTCAAGCGGCAGAAGAAGAGAAACTCCTCCTAGGAATCATCAACACCAACATAGAACACAATCTATACGCAAACTTGGATTCTTCTTCTACCACGATCTTGCAAAATGTGAAGGAACAACAATGGGATTCTCACTCCTCCCCTGAAGCCTGCACCATTGATGAATCCACGATCCCACCTCCTTCTTCGTCGGCGGAAGCCACCGCGACAACGACGAGTCGGCGCAAACGGCGTCGTACGAAGAGCGAGAAGAACAAAGAGGAAATCGAAAACCAGAGGACGACCCACATTGCAGTTGAACGGAACCGCAGAAAGCAGATGAACGAGTACTTAGCCGTACTCCGATCCTTGATGCCCTCTTCTTACGTTCAGAGGGGTGACCAAGCGTCTATCATTGGAGGGGCAATTAACTTTGTGAAGGAGTTGGAGCAGGTTTTGCAGTCAATGGAGGGTGAAAAAAGAAGGAAGCAGGGTGAAGAGAATGTTGGAGCCTTTGCTGAGTTCTTCACGTTTCCTCAGTACACGACGCGTGGCACGCAGAAGCAGGAACAGAAAGAATGGGCCGTCGCAGACATTGAAGTCACCATGGTGGATAGTCATGCGAATCTAAAGATCCTCTCAAAGAAACAACCCTCCCATCTTATGAAGATCGTTCTCGGCCTTCAAAGTCTCAGACTCACCATTCTCCACCTCAATGTTACCACTCTCCACCACATGGTCCTCTACTCAATTAGCGTTAAGGTAGAGGAGGGGTGTGAGCTGAACACGGTGGATGAAATTGCGGCTGCAGTGAATCAACTGTTAGGCACAATCCAACAAGTTGCATTCAACTGA 918 0.488 MALEAVVFPPYACKDYFYSLVGAAPNFGFQAAEEEKLLLGIINTNIEHNLYANLDSSSTTILQNVKEQQWDSHSSPEACTIDESTIPPPSSSAEATATTTSRRKRRRTKSEKNKEEIENQRTTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQVLQSMEGEKRRKQGEENVGAFAEFFTFPQYTTRGTQKQEQKEWAVADIEVTMVDSHANLKILSKKQPSHLMKIVLGLQSLRLTILHLNVTTLHHMVLYSISVKVEEGCELNTVDEIAAAVNQLLGTIQQVAFN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0350 305 SMART finulus 125 176 IPR011598 GO:0046983
Pvu9g0350 305 PANTHER MAX DIMERIZATION, MAD 1 303 - -
Pvu9g0350 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 186 IPR036638 GO:0046983
Pvu9g0350 305 Gene3D - 97 187 IPR036638 GO:0046983
Pvu9g0350 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Pvu9g0350 305 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 303 - -
Pvu9g0350 305 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Pvu9g0350 305 MobiDBLite consensus disorder prediction 67 120 - -
Pvu9g0350 305 MobiDBLite consensus disorder prediction 67 98 - -
Pvu9g0350 305 CDD bHLH_AtFAMA_like 123 189 - -
Pvu9g0350 305 Coils Coil 167 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0350 Pvu-Chr9 7305815 7307338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0350 1 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.671 4.47e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g0350 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0350 - - gmx:100789380 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0350 9 7305815 7307338 Pvu9g0350 9 7305815 7307338 ECH
Pvu8g1840 8 46772730 46775457 Pvu9g0350 9 7305815 7307338 PCT