Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0348 ATGGCGCTTCTACGTGTTGTGTGCTTAACTTCTGCAAATCATTTATCCCCTCAAACCTCTTCCCATTCCATCTCTTTCTCTTCCATTTCCCAATCCATCAACTTCCCCAATCACTCTTCCTTTCGCCTTCCACGCTTATCCCTTTCCACAACCAAACAAACCTCAAATTTCACTCTCACATGCGTTTCCACTTCCGAACAACAAGCCCAGCCAGTTACAGAAGAAGAATTTTCTCGCACAAGGTTGCTCGCTCAGAACGTGCCCTGGACAAGCACCCCAGAGGATATTCGTTCTTTGTTTGAAAAACATGGAAAAGTCCTTGACGTCGAGCTTTCTATGTATAAGAAAGACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGGTCCCCAGAAGAGGCTCTCGAAGCTCTCAATAAACTCGAATCGTATGAGTTTGAGGGTCGTGTAATGAGAGTCAATTATGCTCGCCCGAAAAAGAAGAAAACGCCGCCTCCGGTGAAACCAAGTTCTGGGGTGACCTTTAACTTGTTTGTTGCTAACTTGTCCTACGAAGCCAAGTCCACGGATCTCAAGGAGTTTTTTGATTCCGGAACTGGTAAAGTTGTTAGAGCTGAGGTTGTATTTCATGAAAGTCCTAGAAAGCCGTCAGGTTATGGATTTGTGTCGTTCAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTTCTGAGTTCCAAGGAAAGGATTTTATGGGAAGGTCAATCAGGGTGGATCGGGGTCGGCGATTTGTTCAAAAACCAGGGGATAGGAATCCAAAGTCTGTAGATACTCCTTCTGAGTTGAGTGTGAATGGGGCAGAAGCTCAACAGCCGGCAGAGGAGACTCCAAACTCTGAAGATACTCCTGAGTTGAGTGTGAATGGAACAGAAGCTGACAAGGCTGATTGA 921 0.4604 MALLRVVCLTSANHLSPQTSSHSISFSSISQSINFPNHSSFRLPRLSLSTTKQTSNFTLTCVSTSEQQAQPVTEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLDVELSMYKKDRNRGLAFVEMGSPEEALEALNKLESYEFEGRVMRVNYARPKKKKTPPPVKPSSGVTFNLFVANLSYEAKSTDLKEFFDSGTGKVVRAEVVFHESPRKPSGYGFVSFKSKKEAEAALSEFQGKDFMGRSIRVDRGRRFVQKPGDRNPKSVDTPSELSVNGAEAQQPAEETPNSEDTPELSVNGTEADKAD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0348 306 MobiDBLite consensus disorder prediction 250 306 - -
Pvu9g0348 306 Gene3D - 161 265 IPR012677 -
Pvu9g0348 306 SMART rrm1_1 81 153 IPR000504 GO:0003723
Pvu9g0348 306 SMART rrm1_1 175 249 IPR000504 GO:0003723
Pvu9g0348 306 Gene3D - 49 160 IPR012677 -
Pvu9g0348 306 CDD RRM_SF 86 153 - -
Pvu9g0348 306 SUPERFAMILY RNA-binding domain, RBD 66 166 IPR035979 GO:0003676
Pvu9g0348 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 150 IPR000504 GO:0003723
Pvu9g0348 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 247 IPR000504 GO:0003723
Pvu9g0348 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Pvu9g0348 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Pvu9g0348 306 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 280 - -
Pvu9g0348 306 SUPERFAMILY RNA-binding domain, RBD 173 259 IPR035979 GO:0003676
Pvu9g0348 306 MobiDBLite consensus disorder prediction 266 296 - -
Pvu9g0348 306 PANTHER OS08G0483200 PROTEIN 1 280 - -
Pvu9g0348 306 CDD RRM_SF 176 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0348 Pvu-Chr9 7284598 7286848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0348 80 256 Eukaryotic Initiation Factors Gene Family AT3G16380 29.167 1.49e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0348 - - gmx:100790439 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0348 9 7284598 7286848 Pvu9g0348 9 7284598 7286848 ECH