Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0332 ATGAGTGAGACAGCAAGTCTTCATGCACAAACAAGGCCCATTTCTTCTCTGGAAGCCATGGCCCATCACCACCCGCATTATCGGTCACCCTTCGGAGACACAACCTTCACCAAACTGTTCGTGGGAGGACTGGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGCGACATTCTTGAAGCTGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGATTCGTAACATTCTGCGACCAAGAATCAGCAAGGAGAGCATGTGCTGATCCAAATCCAATAATAGATGGCAGAAGAGCAAATTGTAATATTGCTTCTCTGGGAAGGACTCGACCTTCACCACCTCGAGGGAGGAATATAGTTCAAGGTGGAGGAGGAACAGCACAGAGTGTTCCGGGAGCGGGACCGCCGCCGTCGCTGCCGCCAGCACCTGCTGTTCTGTATCCACCATATGGCTATACAACCTACACCCCTGATTATGGATACCACCACCAAGCCACATTGTACAATCCACAGATTCAGCAACCACAATACTATCAACAAGTCTATGGAGCATCATCTTCCACCATGAGCACCCCATATTACTATGGTTACTCTGTGCAAGCACCAAGAAGCACATTTTCCTCACCCCAGGCAAATCGCCTATCACCTGGACCATCTTATCTGTACTATCCTACACCCGTGGAAGTCTCATTCTCTGGATATCGCCCACTCCAACAATCACCAATGAGCCAAAACTTTCCTTCTCCAAGTGATTCACAGAGTCAGCAGCGTATCTCCTCTGAAACAGCAGCCACTTCAGAAAGTTCAAATACCCAAGGGAAGAACTAA 852 0.4871 MSETASLHAQTRPISSLEAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRNIVQGGGGTAQSVPGAGPPPSLPPAPAVLYPPYGYTTYTPDYGYHHQATLYNPQIQQPQYYQQVYGASSSTMSTPYYYGYSVQAPRSTFSSPQANRLSPGPSYLYYPTPVEVSFSGYRPLQQSPMSQNFPSPSDSQSQQRISSETAATSESSNTQGKN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0332 283 PANTHER GEO13361P1-RELATED 23 276 - -
Pvu9g0332 283 PANTHER - 23 276 - -
Pvu9g0332 283 CDD RRM_RBM24_RBM38_like 37 112 - -
Pvu9g0332 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 96 IPR000504 GO:0003723
Pvu9g0332 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 114 IPR000504 GO:0003723
Pvu9g0332 283 MobiDBLite consensus disorder prediction 241 283 - -
Pvu9g0332 283 SUPERFAMILY RNA-binding domain, RBD 21 136 IPR035979 GO:0003676
Pvu9g0332 283 Gene3D - 5 134 IPR012677 -
Pvu9g0332 283 SMART rrm1_1 38 110 IPR000504 GO:0003723
Pvu9g0332 283 MobiDBLite consensus disorder prediction 114 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0332 Pvu-Chr9 7052507 7057543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0332 33 113 C2H2 Transcription Factor Family AT2G19380 38.272 5.51e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0332 K25006 - gmx:100811977 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0332 9 7052507 7057543 Pvu9g0332 9 7052507 7057543 ECH
Pvu8g1805 8 45858269 45863276 Pvu9g0332 9 7052507 7057543 PCT