Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0305 ATGGCAGCTATGATGGGTTTTTACAGCAGCACAGAGTTTCAACTTCCCTCAGATCCGTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCTCAACCCCCTCTTTCTCTTCCTCACCTTCAAACTCCTCTTTCCCTTCTACTTCTTACTCTCCTTCTCCCGTCTACTTCCCCTCCTCACCCTCCTTGCCTAATATTTATGCAAACAACTGCTCCGCGTCGATGACCCATGTGTATTCCGACGGCTTATCCCTATCCAACACTCAAAATATCATAGGCTTCGCTCAAGGCCAACCAACATCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATCTCTCAGATCCAGGCTCAAATCCAGATTCAGAGCCAGCATCAGCACAATCTCAACACCCTGAACTTCCTCGGGCCCAAGCCCATCCCTATGAAGCACGCGGGCATGCCTCTGAAGCCCACGAAGCTGTACCGAGGGGTGCGTCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTTCCCAAGAATCGGACCAGGCTCTGGCTGGGAACCTTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCTGCGTACAAACTCCGAGGTGACTTCGCCAGGCTTAACTTCCCCAACCTCCGTCACCAGGGTTCCTCGGTGGGCGGAGGCTTCGGGGAGTACAAGCCGCTCCATTCCTCTGTTGACGCTAAGCTTCAGGCCATTTGCGAAGGCCTGGCTGAGATGCAGAAACAGGGAAAGACCGAAAAACCTCAGGGTTCGTCCAGGAGGTCGCGAGCCAAAGTCGCTCCTCCGCCAGAGAAGGCTGATTCCGGTAAGGGTTCGGACGACACCACCACCAACAACTCTTGCAAAGTGGAAGCATCCTCGTCTCCCGTGACGACGGAAAGCGAGGGGTCTGAAGGTTCTTCGCCTCTCTCGGATCTGACATTTGTTGACGTGAGCGAGCCTCAGTGGGAAGGTGATTCGGATAATTTTAACCTCCACAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 1062 0.5395 MAAMMGFYSSTEFQLPSDPFRGELMEVLEPFMKSPSSTPSFSSSPSNSSFPSTSYSPSPVYFPSSPSLPNIYANNCSASMTHVYSDGLSLSNTQNIIGFAQGQPTSLLGLNHLTPSQISQIQAQIQIQSQHQHNLNTLNFLGPKPIPMKHAGMPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGGFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKPQGSSRRSRAKVAPPPEKADSGKGSDDTTTNNSCKVEASSSPVTTESEGSEGSSPLSDLTFVDVSEPQWEGDSDNFNLHKYPSYEIDWDSL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0305 353 MobiDBLite consensus disorder prediction 262 286 - -
Pvu9g0305 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 352 - -
Pvu9g0305 353 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Pvu9g0305 353 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Pvu9g0305 353 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Pvu9g0305 353 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Pvu9g0305 353 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Pvu9g0305 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 352 - -
Pvu9g0305 353 MobiDBLite consensus disorder prediction 255 337 - -
Pvu9g0305 353 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Pvu9g0305 353 MobiDBLite consensus disorder prediction 287 323 - -
Pvu9g0305 353 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Pvu9g0305 353 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0305 Pvu-Chr9 6536069 6538397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0305 1 353 AP2-EREBP Transcription Factor Family AT1G78080 53.388 1.96e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu9g0305 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0305 K09286 - gmx:100800478 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0305 9 6536069 6538397 Pvu9g0305 9 6536069 6538397 ECH
Pvu8g1786 8 45116054 45117855 Pvu9g0305 9 6536069 6538397 PCT