Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0285 ATGTCCTCGTCTTTGTCGTCGTCAAATTCGCCGTGCGCCGCCTGCAAGATTCAGCGCCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTATTTTCCGCCGGACAACCCGCAGCGCTTTGCCTACGTGCACAAGGTGTTCGGGGCGAGCAACGTCGCCAAGCTTCTCAACGAACTCAACGCGGCGCAGCGCGAGGACGCGGTTAAGTCCCTCGCCTACGAGGCCGAGGCGCGTCTGCGGGACCCCGTCTATGGCTGCGTGGGTCTCATCTCCATCCTCCAGCACCGCCTCAAGCAGTTGCAGACCGAACTCCACCACGCCAAGAAGGAACTCGCCTCTTACATCGGACCCCACGCCATGCTCCCTCCTCCTCCGCCGCCTCCGCCGCAACCTCGCACTTTCTCTCTCTTTCCCTTCAAAACGGCACCTCCTCCTCCTCATCAAGATCTTTTCGCCTTCACGGACGACGGTGCTTCCGCTTCTCACTCTTCTCACGCCGCCTTCAACCACCTCGCTGTTCTCTCGCCTACCCTCGCCGCCGATCACGCCTTCCCTCATGCACCCCTCCACCCTCTCGGTCTTCCGCATCACCAACATCTAATGCTCTCCCCTATGCAATCCAAGCCCCAAACCGACCCTGCTTAA 645 0.6124 MSSSLSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQTELHHAKKELASYIGPHAMLPPPPPPPPQPRTFSLFPFKTAPPPPHQDLFAFTDDGASASHSSHAAFNHLAVLSPTLAADHAFPHAPLHPLGLPHHQHLMLSPMQSKPQTDPA* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0285 214 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Pvu9g0285 214 Coils Coil 90 110 - -
Pvu9g0285 214 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Pvu9g0285 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 5 122 - -
Pvu9g0285 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0285 Pvu-Chr9 6159747 6161521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0285 5 132 AS2 family AT5G66870 76.515 8.30e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu9g0285 LOB 2.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0285 - - gmx:100819170 303.523