Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0277 ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTGGCATGTGGGGTGACGGCTTTAAAGTTGATGGTGGCCTGAATTCAATTGCTTCCCCAATATTAATGGTAGACACTAATGTCGAGGGCAAGTCTGAATATATTCCTCAAGAATCAAGAGAGCTTTCTGGAGCCGATCAGGAGACCACTGATAAAGATGTTAATAAGATGAGAAGACGTCTAGCTCAAAATAGAGAGGCTGCTCGGAAAAGTCGGCTAAGGAAAAAGGCGTATGTTAAACAGTTAGAATCAAGCCGCATGAAGCTCATGCAGTTGGAGCTGGAAATTGGGAAAGCAAGAAAACAGGGTCTGTACATGGGTACTGCACTAGATGCCAGCTATATAGGATCAACATCAGAAACAATAAATCCAGTTATTGTTGCTTTTGAAATTGAATATGGGCAATGGGTTGAAGAGCAACACAGGCGGAATGAAGAGCTTAGACATGCATTTCAAACTCAAGCACCTGATGTTCAGCTGAATGTAGTGGTTCAGAGTGTCTTGAACCATTACTCAAATCTCGTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTTCTCTATTTACTCTCTGGTGTGTGGAAAGCATCAGTGGAGCGAATCTTCCTTTGGATTGGAGGCTCCCGTCCATCTCAAATTCTAAACATCATCGTACCACAACTTGAGCCTTTGACTGATCAACAAATTGTTGGTATTAACAACCTCCGCCTAAATTCTCAACAAGCTGAAGATGCTCTTTCACAGGGATTGGAAAAACTTCAGCAGAGTTTGGTCCATGACATGGCAGTTGATCCATTCGGTGTAGGAAACTTCGAACTTCAGATGGCTGCTATGGAAAAATTTGATGCACTAGAAGGTTTTGTAATCCAGGCAGATCACCTTAGACTACAAACTCTGCTTCACATGTCACGCATCCTCTCAACTCACCAAGCTGCTCGTGGCTTGCTGGCTCTTGGGGAATACTTTCACCGTCTTCGCACTCTTTGCTCTCTTTGGGCTTCTCGTCCATGTGAACTTCCCTAG 1056 0.4356 MKMDIYEPFQQVGMWGDGFKVDGGLNSIASPILMVDTNVEGKSEYIPQESRELSGADQETTDKDVNKMRRRLAQNREAARKSRLRKKAYVKQLESSRMKLMQLELEIGKARKQGLYMGTALDASYIGSTSETINPVIVAFEIEYGQWVEEQHRRNEELRHAFQTQAPDVQLNVVVQSVLNHYSNLVRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQILNIIVPQLEPLTDQQIVGINNLRLNSQQAEDALSQGLEKLQQSLVHDMAVDPFGVGNFELQMAAMEKFDALEGFVIQADHLRLQTLLHMSRILSTHQAARGLLALGEYFHRLRTLCSLWASRPCELP* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0277 351 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Pvu9g0277 351 Pfam Seed dormancy control 156 229 IPR025422 GO:0006351|GO:0043565
Pvu9g0277 351 Coils Coil 86 113 - -
Pvu9g0277 351 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 65 100 IPR004827 GO:0003700|GO:0006355
Pvu9g0277 351 ProSiteProfiles DOG1 domain profile. 137 346 IPR025422 GO:0006351|GO:0043565
Pvu9g0277 351 Pfam bZIP transcription factor 67 96 IPR004827 GO:0003700|GO:0006355
Pvu9g0277 351 PANTHER TRANSCRIPTION FACTOR TGA9 3 348 - -
Pvu9g0277 351 PANTHER FACTOR TGA7, PUTATIVE-RELATED 3 348 - -
Pvu9g0277 351 Gene3D - 66 115 - -
Pvu9g0277 351 SMART brlzneu 62 123 IPR004827 GO:0003700|GO:0006355
Pvu9g0277 351 SUPERFAMILY Leucine zipper domain 67 100 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0277 Pvu-Chr9 6052599 6055796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0277 3 349 Calmodulin-binding Proteins AT1G77920 52.762 4.03e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu9g0277 DOG1 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0277 K14431 - gmx:100794268 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0277 9 6052599 6055796 Pvu9g0277 9 6052599 6055796 ECH
Pvu8g1753 8 44024319 44028933 Pvu9g0277 9 6052599 6055796 PCT