Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0269 ATGCCTCGGCAACCGCCACCACCACCGCCGCAGCAGCCCGGGGCTTTGGAAGCGGCGGTATGGCAAGCCTGCGCAGGACCGTCTGTGGAAATCCCCAAGCCAAATTCTATGGTTTACTACTTCGCTCAGGGACACTTTGATCAAGCCTCTTCGCCTCCGCGAAACGTCTCCTCTGCGGTTCTGGCCAGACCCTTCGTTACCTGCAACGTGGTCGCTGTTCGATTTCTTGCCGATCCTCTTACCGATGAGGTTTTCGCAAAGATGGTTCTCCAACCTGTTGCTAATGTCTTCGCTGCTGCTGCTGCTCCCCTTCATAATCATGCTGCTGCTCCCCCGCAAAAAGATGACAAAGAGGTTGTTTCGTTCGCCAAGATTCTCACGCCGTCTGATGCCAACAACGGCGGGGGCTTCTCCGTGCCCAGGTTTTGCGCGGACTCCATCTTCCCGCCGCTGGACTACGACGAGGACCCGCCCGTGCAGAACCTCTCCGTCACTGACGTGCACGGCTTCACCTGGGAGTTCCGCCACATTTTCCGTGGGACGCCGCGCCGCCACCTGCTTACCACCGGCTGGAGCACGTTCGTCAACAACAAGAAGCTTGTCGCCGGGGACTCCGTCTTGTTCATGAAGAACGCCGACAAGCGTTTGTTAGTCGGAATTCGCCGCGCCACGCGCTTTGCTCCGGGAAGGGGCAGCTGCGTAAAACTCAGGTTAATTGATGAGGAGGAGGAGGAGGAGGAGGAAAAAGAAGAGGTGAGAGGGGTTTTCTCGAGGGACGGGAAGGGGAAGCTGTCGGCTAAGGAGGTTGTGGAGGCGGCGGAGTTGGCGGTGCGGAACATGCAGTTTGAGGTTGTTTATTACCCCAAGGCTGGTTGGTCCGAGTTCGTAGTGAAGACTGAAGTGGTGGATGCAGCGATGAGGATTGCATGGAGAGATGGAATGAGAGTGAAGATGTCCGTGGAGACCGATGATTCCTCCAGGACGACGTGGTTTCAGGGTACGGTCTCTGCTGTTTCATATCAGGAGAATGGCCAATGGTGCTCTTCTCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGGGTTGCAGAATGCAAAGTGGGTTAGCCCTTGGCAGGTAGAACTTGTTTCCACCACACCTGCCCTTCATTCAGCATTCCCCTCACCAAAAAGGCTTAGAACTGCTAATGGTTCTTGGGTGTATGCTAATGGAGAGGGAGACCTCTTTTCTATGACCGGATTCACTAATCCAGCAATGGGACACCTGAATCAAGCGTTGTGGAGTTATAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTTCCAGTTATCCAAGGGACATGTCTCATCTGGGTATGTGTAATTCCTTTGGGAACAGCACATTTTCAAGGCTGAATAATTTGTCCATAGATCCATCCCCTGATAGCCGTAGCAGTTTGCATTCCTGTGTCATAGACACTGTTGGGAATCACAAAAGCAACTCAACAAAACCGGTGTCTGATTCATTTCAGCTATTTGGTGCAGTCATTCGGAAAGAACAACCTGTTCAAAGTAGTTTGACAGGCACTGGTTGCGCTAGCACAGGAGATAAAAAAGCCTTGGAATATAAGGGTTCTTACTTGTGA 1656 0.526 MPRQPPPPPPQQPGALEAAVWQACAGPSVEIPKPNSMVYYFAQGHFDQASSPPRNVSSAVLARPFVTCNVVAVRFLADPLTDEVFAKMVLQPVANVFAAAAAPLHNHAAAPPQKDDKEVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYDEDPPVQNLSVTDVHGFTWEFRHIFRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFMKNADKRLLVGIRRATRFAPGRGSCVKLRLIDEEEEEEEEKEEVRGVFSRDGKGKLSAKEVVEAAELAVRNMQFEVVYYPKAGWSEFVVKTEVVDAAMRIAWRDGMRVKMSVETDDSSRTTWFQGTVSAVSYQENGQWCSSPWRMLQVTWDEPEGLQNAKWVSPWQVELVSTTPALHSAFPSPKRLRTANGSWVYANGEGDLFSMTGFTNPAMGHLNQALWSYSTFPAGMQGARHDVFSASSFSSYPRDMSHLGMCNSFGNSTFSRLNNLSIDPSPDSRSSLHSCVIDTVGNHKSNSTKPVSDSFQLFGAVIRKEQPVQSSLTGTGCASTGDKKALEYKGSYL* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0269 551 Gene3D - 311 383 - -
Pvu9g0269 551 SMART B3_2 122 224 IPR003340 GO:0003677
Pvu9g0269 551 CDD B3_DNA 121 222 IPR003340 GO:0003677
Pvu9g0269 551 SUPERFAMILY DNA-binding pseudobarrel domain 113 235 IPR015300 -
Pvu9g0269 551 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Pvu9g0269 551 PANTHER AUXIN RESPONSE FACTOR 9 542 - -
Pvu9g0269 551 Gene3D - 119 224 IPR015300 -
Pvu9g0269 551 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 542 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu9g0269 551 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu9g0269 551 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0269 Pvu-Chr9 5991977 5995817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0269 16 543 B3 DNA Binding Superfamily AT1G77850 43.455 5.73e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu9g0269 B3 5.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0269 - - gmx:102662128 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0269 9 5991977 5995817 Pvu9g0269 9 5991977 5995817 ECH
Pvu8g1750 8 43876161 43880342 Pvu9g0269 9 5991977 5995817 PCT