Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0244 ATGGCTTCTGCAGAAATTGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACTGACAGCGAAGCTCTTGACAAAGCCTTCTCAAAGTATGGCCAGATCATCGAATCGAAGGTAATCAACGATCGCGAAACTGGAAGATCAAGAGGGTTTGGATTTGTGACCTTCGCCACGGAACAGGCGATGAGAGACGCTATCGAAGGTATGAACGGCCAGAACCTCGACGGCCGTAACATCACCGTCAACGAGGCTCAGTCTCGTGGGAGAGGCGGTGGTGGTGGTGGTTATGGAGGCGGCGGCGGCGGTGGTGGTGGATATGGCGGTAATGGCGGTGGAGGAGGATATGGCCGAGGTGGTGGAGGAGGTAGTTACGGTGGAGGCGGCGGCAGACGTGAAGGTGGTTATAACCGTAATGGTGGTGGTGGAGGTTATGGTGGCGGTGGTGGTGGATACGGAGGTGGTGGTTATGGAGGTGGAAGAGACCGTGGATATGGCGATGGTGGGTCCCGCTATTCGAGAGGAGGTGGTGCTTCGGATGGTGGAAGCTGGAGGAATTAG 558 0.5627 MASAEIEFRCFVGGLAWATDSEALDKAFSKYGQIIESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGYGGGGGGGGGYGGNGGGGGYGRGGGGGSYGGGGGRREGGYNRNGGGGGYGGGGGGYGGGGYGGGRDRGYGDGGSRYSRGGGASDGGSWRN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0244 185 Gene3D - 2 107 IPR012677 -
Pvu9g0244 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Pvu9g0244 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Pvu9g0244 185 MobiDBLite consensus disorder prediction 151 185 - -
Pvu9g0244 185 SMART rrm1_1 9 82 IPR000504 GO:0003723
Pvu9g0244 185 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN GRP1A-LIKE 1 137 - -
Pvu9g0244 185 PANTHER TRANSFORMER-2-RELATED 1 137 - -
Pvu9g0244 185 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0244 Pvu-Chr9 5456947 5458052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0244 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 4.33e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0244 - K13195 gmx:100777821 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0244 9 5456947 5458052 Pvu9g0244 9 5456947 5458052 ECH